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2024-07-15 04:45:01, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_059488072            2027 bp    mRNA    linear   VRT 15-SEP-2023
DEFINITION  PREDICTED: Ammospiza nelsoni vimentin (VIM), mRNA.
ACCESSION   XM_059488072
VERSION     XM_059488072.1
DBLINK      BioProject: PRJNA994576
KEYWORDS    RefSeq.
SOURCE      Ammospiza nelsoni
  ORGANISM  Ammospiza nelsoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae;
            Ammospiza.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_080633) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_027579445.1-RS_2023_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/08/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Ammospiza nelsoni"
                     /mol_type="mRNA"
                     /isolate="bAmmNel1"
                     /specimen_voucher="NESP 2821-27714"
                     /db_xref="taxon:2857394"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Barn Island Wildlife Management Area, New
                     Hampshire"
                     /lat_lon="44.5864 N 68.8591 W"
                     /collection_date="2020-07-31"
                     /collected_by="Nicole Guido"
     gene            1..2027
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 39 Proteins"
                     /db_xref="GeneID:132083373"
     CDS             79..1458
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_059344055.1"
                     /db_xref="GeneID:132083373"
                     /translation="
MSISTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSALRPSSARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      2027
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cagccaccgcccttcttcaccgcacacccggatcgtcccgctccgctcccggattacaaagcccgcgccgccgtcgctatgagcatcagcacgaaaaactcctcgtaccggcgcatgttcggcgggggcagccgccccagcaccggcacccgctacatcacgtccagcagccggtactcgctgggcagcgccctgcggcccagcagcgcccggtacgtgtccgcctcgcccggcggcatgtacgccaccaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggttgagctgcaggagcttaatgaccgcttcgccaactacatcgacaaggtgcgctttctggagcagcagaacaagatcttgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcggcgacaggtggaccagctcaccaacgacaaggcacgagtggaagtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagctgcaagaggagatgcttcagagggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaacgcctctctggcacgtcttgatcttgagcgcaaagtcgagtccctgcaagaggagattgtcttcttgaagaaacttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgacctcactgctgccctgcgggatgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgatgccctgcgccaggccaagcaggaagccaatgagtaccgcagacagatccagtctctcacctgcgaggttgatgctcttaagggaagcaatgagtccctggagcgccaaatgcgtgaaatggaggagaatttcgctgtggaagctgctaactaccaagacactattgggcgcctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatattgaaattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagagaacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagatgcattcttactaaaggagaaactcttaccagcaagattgaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagatgattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctcttgatgtgttctaatttgttaaacttcatgactttctggaaagccataacaacataatgctggaattgttatacggttgacatctttagtactggctgtgtggaatgctgttttttcagtttaactagataaactgtcttacttatttactgcttaggttttggaaccaattaaaatggattataactggcagatgcataatgtattatgatatcacttgaataaaatatgatacttcaagctaataaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]