2024-09-08 09:30:40, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_059488072 2027 bp mRNA linear VRT 15-SEP-2023 DEFINITION PREDICTED: Ammospiza nelsoni vimentin (VIM), mRNA. ACCESSION XM_059488072 VERSION XM_059488072.1 DBLINK BioProject: PRJNA994576 KEYWORDS RefSeq. SOURCE Ammospiza nelsoni ORGANISM Ammospiza nelsoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Ammospiza. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080633) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_027579445.1-RS_2023_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/08/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2027 /organism="Ammospiza nelsoni" /mol_type="mRNA" /isolate="bAmmNel1" /specimen_voucher="NESP 2821-27714" /db_xref="taxon:2857394" /chromosome="1" /sex="female" /tissue_type="blood" /geo_loc_name="USA: Barn Island Wildlife Management Area, New Hampshire" /lat_lon="44.5864 N 68.8591 W" /collection_date="2020-07-31" /collected_by="Nicole Guido" gene 1..2027 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins" /db_xref="GeneID:132083373" CDS 79..1458 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_059344055.1" /db_xref="GeneID:132083373" /translation="
MSISTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSALRPSSARYVSASPGGMYATKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 2027 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cagccaccgcccttcttcaccgcacacccggatcgtcccgctccgctcccggattacaaagcccgcgccgccgtcgctatgagcatcagcacgaaaaactcctcgtaccggcgcatgttcggcgggggcagccgccccagcaccggcacccgctacatcacgtccagcagccggtactcgctgggcagcgccctgcggcccagcagcgcccggtacgtgtccgcctcgcccggcggcatgtacgccaccaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctccctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggttgagctgcaggagcttaatgaccgcttcgccaactacatcgacaaggtgcgctttctggagcagcagaacaagatcttgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcggcgacaggtggaccagctcaccaacgacaaggcacgagtggaagtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagctgcaagaggagatgcttcagagggaggaggccgagaacaccctgcagtccttcagacaggatgttgacaacgcctctctggcacgtcttgatcttgagcgcaaagtcgagtccctgcaagaggagattgtcttcttgaagaaacttcatgatgaggaaatccgagaactgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgacctcactgctgccctgcgggatgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagctgaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgatgccctgcgccaggccaagcaggaagccaatgagtaccgcagacagatccagtctctcacctgcgaggttgatgctcttaagggaagcaatgagtccctggagcgccaaatgcgtgaaatggaggagaatttcgctgtggaagctgctaactaccaagacactattgggcgcctgcaggatgagattcagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggctcttgatattgaaattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagagaacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagatgcattcttactaaaggagaaactcttaccagcaagattgaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagatgattatgctaggaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctcttgatgtgttctaatttgttaaacttcatgactttctggaaagccataacaacataatgctggaattgttatacggttgacatctttagtactggctgtgtggaatgctgttttttcagtttaactagataaactgtcttacttatttactgcttaggttttggaaccaattaaaatggattataactggcagatgcataatgtattatgatatcacttgaataaaatatgatacttcaagctaataaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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