2024-09-08 09:31:37, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_059404239 1807 bp mRNA linear MAM 09-SEP-2023 DEFINITION PREDICTED: Mustela nigripes vimentin (VIM), mRNA. ACCESSION XM_059404239 VERSION XM_059404239.1 DBLINK BioProject: PRJNA1010132 KEYWORDS RefSeq. SOURCE Mustela nigripes (black-footed ferret) ORGANISM Mustela nigripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081562) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_022355385.1-RS_2023_09 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 09/07/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1807 /organism="Mustela nigripes" /mol_type="mRNA" /isolate="SB6536" /db_xref="taxon:77151" /chromosome="6" /sex="male" /tissue_type="spleen" /dev_stage="adult" gene 1..1807 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:132020132" CDS 88..1488 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_059260222.1" /db_xref="GeneID:132020132" /translation="
MSTRSVSSSSYRRMFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGGYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEDNFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1807 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agcgctctaatcgcccacacccaccgcgccctcgctcgcctgtcggtgccgcagccgccgcccagcccatcgccaccctttgcagccatgtccaccaggtctgtgtcctcgtcctcctatcgcaggatgttcggcggccccggcaccgggagccggccgagctccacgcgcagctacgtgaccacgtccacccgcacctacagcctgggcagcgccctgcgccccagcaccagccgcagcctctacacctcgtccccgggcggcgggtatgtcacgcgctcctccgcggtgcgccttcggagcagtgtgcccggcgtgcgcctgctgcaggactccgtagacttctcgctggcggacgccatcaacaccgagttcaagaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgctaactacattgacaaggtgcgcttcctggaacagcagaacaagattctgctggccgagctcgagcagctcaagggccagggcaaatcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggatcagcttaccaacgacaaggcccgcgtcgaagtggagcgcgacaacctggccgaggacattatgcggctccgggagaagttgcaagaggagatgctgcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgaggaggaaatccaggagctgcaggcccagattcaggaccagcatgtccagatcgatatggatgtttccaagcccgacctcacggctgccctgcgagacgtccgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccgaaacaatgatgccctgcgccaggcgaagcaggagtccaatgagtaccggagacaggtgcagtccctcacctgcgaagtggacgccctcaaagggactaatgagtctctggaacgccagatgcgtgaaatggaggataactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggcccgtcaccttcgggagtaccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggtcgatactcactcaaaaaggacacttctgatcaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaagatggcacagagtcggtgcagcggtcactaccagcaagaataaaaacagaaatccgtatcttaaagaaacagcttccaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctctagttcttaagaaccaacactcttaaaagatttaggaaaaagtttacaacataatctagtttaccaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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