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2024-07-15 04:50:35, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_059404239            1807 bp    mRNA    linear   MAM 09-SEP-2023
DEFINITION  PREDICTED: Mustela nigripes vimentin (VIM), mRNA.
ACCESSION   XM_059404239
VERSION     XM_059404239.1
DBLINK      BioProject: PRJNA1010132
KEYWORDS    RefSeq.
SOURCE      Mustela nigripes (black-footed ferret)
  ORGANISM  Mustela nigripes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Musteloidea; Mustelidae; Mustelinae; Mustela.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081562) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_022355385.1-RS_2023_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/07/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Mustela nigripes"
                     /mol_type="mRNA"
                     /isolate="SB6536"
                     /db_xref="taxon:77151"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="spleen"
                     /dev_stage="adult"
     gene            1..1807
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 54 Proteins"
                     /db_xref="GeneID:132020132"
     CDS             88..1488
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_059260222.1"
                     /db_xref="GeneID:132020132"
                     /translation="
MSTRSVSSSSYRRMFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGGYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEDNFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     polyA_site      1807
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
agcgctctaatcgcccacacccaccgcgccctcgctcgcctgtcggtgccgcagccgccgcccagcccatcgccaccctttgcagccatgtccaccaggtctgtgtcctcgtcctcctatcgcaggatgttcggcggccccggcaccgggagccggccgagctccacgcgcagctacgtgaccacgtccacccgcacctacagcctgggcagcgccctgcgccccagcaccagccgcagcctctacacctcgtccccgggcggcgggtatgtcacgcgctcctccgcggtgcgccttcggagcagtgtgcccggcgtgcgcctgctgcaggactccgtagacttctcgctggcggacgccatcaacaccgagttcaagaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgctaactacattgacaaggtgcgcttcctggaacagcagaacaagattctgctggccgagctcgagcagctcaagggccagggcaaatcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggatcagcttaccaacgacaaggcccgcgtcgaagtggagcgcgacaacctggccgaggacattatgcggctccgggagaagttgcaagaggagatgctgcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcacgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgaggaggaaatccaggagctgcaggcccagattcaggaccagcatgtccagatcgatatggatgtttccaagcccgacctcacggctgccctgcgagacgtccgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccgaaacaatgatgccctgcgccaggcgaagcaggagtccaatgagtaccggagacaggtgcagtccctcacctgcgaagtggacgccctcaaagggactaatgagtctctggaacgccagatgcgtgaaatggaggataactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggcccgtcaccttcgggagtaccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggtcgatactcactcaaaaaggacacttctgatcaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaagatggcacagagtcggtgcagcggtcactaccagcaagaataaaaacagaaatccgtatcttaaagaaacagcttccaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctctagttcttaagaaccaacactcttaaaagatttaggaaaaagtttacaacataatctagtttaccaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgctttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]