2024-09-14 06:02:01, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_059263607 1855 bp mRNA linear ROD 31-AUG-2023 DEFINITION PREDICTED: Peromyscus eremicus vimentin (Vim), mRNA. ACCESSION XM_059263607 VERSION XM_059263607.1 DBLINK BioProject: PRJNA1009129 KEYWORDS RefSeq. SOURCE Peromyscus eremicus (cactus mouse) ORGANISM Peromyscus eremicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081420) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_949786415.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1855 /organism="Peromyscus eremicus" /mol_type="mRNA" /db_xref="taxon:42410" /chromosome="5" gene 1..1855 /gene="Vim" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins" /db_xref="GeneID:131911500" CDS 142..1542 /gene="Vim" /codon_start=1 /product="vimentin" /protein_id="XP_059119590.1" /db_xref="GeneID:131911500" /translation="
MSTRSMSSSSYRRMFGGPGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSMPGVRLMQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAEGTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
polyA_site 1855 /gene="Vim" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gggtccagtcctctgccactcttgctccaggaccccagagacagcagcgcgcccacggttcgcatccaccgcgccctcgctctcctttcggagccggtctttgcagctgcagcagcccagcccaccttcgccctcgaaaccatgtccaccaggtccatgtcctcgtcctcctaccgcaggatgttcggtggccccggcacctcgagccggccgagctccaacaggagctatgtgaccacgtccacccgcacctacagcctgggcagcgccctgcgccccagcaccagccgcagcctctattcctcatcccccggtggcgcctatgtgacccggtcctccgccgtgcgcctgcggagcagcatgcccggcgtgcggctgatgcaggactccgtggacttctcgctggccgacgccatcaacaccgagttcaagaacactcgcaccaacgagaaggtggaactgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaaaatcctgctggccgagctcgagcagctcaaaggccagggcaagtcgcgcctgggcgacctctatgaggaggagatgcgggagctgcgccggcaggtggatcagctcaccaacgacaaggcccgcgtcgaggtggagcgtgacaacctggctgaggacatcatgcggctgcgagagaaattgcaggaggagatgctccagagagaggaagctgagggcaccttgcagtccttcagacaggatgttgacaatgcatctctggcacgtcttgaccttgaacgtaaagtggaatccttgcaagaagagatcgcctttttgaagaaactgcatgatgaggagatccaggagctacaggcccagattcaggaacagcatgtccagattgacgtggatgtttccaagcccgacctcaccgctgccctgcgtgacgtccgccagcagtatgaaagtgtggctgccaagaacctccaggaggcagaggaatggtacaagtctaagtttgctgacctctctgaggctgccaaccggaacaatgatgccctgcgccaggcaaagcaggagtcaaatgagtaccggagacaggtgcagtcgctcacctgtgaagtggatgctcttaaaggaactaatgagtccctggaacgccagatgcgtgagatggaagagaattttgcccttgaagctgctaactaccaggacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcatcttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaccttttcttccttgaacctgagagaaactaatctggagtcactccctctggttgacacccactcaaaaagaacactcctgattaagacagttgaaaccagagacggacaggtgatcaatgaaacctctcagcatcacgatgaccttgaataaaaattgcacacactccgtgcaacagcgcagtaccagcaagaagaaaaaagaaactcataccttaaggaaacagctttcaagtgcctttactgcagtttttcaggagcgcaagatagatctggatagaaataagctctagtttctaacaactgacaccctaaaagatttagaaaaggtttacaacacaatctagtttacgaagaaatcttgtgctagaatactttttaaagtatttttgaataccattaaaactgctttttttccagtaaatacctgaccaacttgttactgcttcaataaatcttcagaaata
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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