2024-09-08 09:23:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058797754 2772 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Onychostoma macrolepis vimentin-related 2 (vimr2), mRNA. ACCESSION XM_058797754 VERSION XM_058797754.1 DBLINK BioProject: PRJNA999377 KEYWORDS RefSeq. SOURCE Onychostoma macrolepis ORGANISM Onychostoma macrolepis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Acrossocheilinae; Onychostoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081168) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_012432095.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2772 /organism="Onychostoma macrolepis" /mol_type="mRNA" /isolate="SWU-2019" /db_xref="taxon:369639" /chromosome="14" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..2772 /gene="vimr2" /note="vimentin-related 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:131553244" CDS 238..1407 /gene="vimr2" /codon_start=1 /product="desmin" /protein_id="XP_058653737.1" /db_xref="GeneID:131553244" /translation="
MALLRVSSYRKLFEEERWSQAAGRCGVQASFTARGGVSVRECPELDFAAARALNKEGVARFVYERSVIAALNDRLAGLIDVVRCLEEENESLEAEIIELEERLGSEQMSTTTVSISGPVDYSLEAVIERLQKEKEEILCNTEELKGELRRLQMKYDQVVEHKRLIQQEREDVSVEVDAITTDCLALREQVAIYEEQLAAMERQHETRLEKLCEPRTPDEGSPTVSLQFPSFDITPAIMGIKEYYGTLVESLKFEFRASSAAAIDAAGKEKEEQLAELTGGKVKDISKETDVNVLKNLIAELQKEVAELEKRGDELEAEIEARKAKYLEEIEKLENYICQLEEEEADLQFQMKDQSGDYEELLNQKMNLDIEIAAYRGLVEEEEERLSCL"
misc_feature 427..1392 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:459643" ORIGIN
tcttcaaagctgaactgtcattgtcccagtataactgctttctgaaggagtggcctccaatctctaaattgtttctgcttcatgtgaaaggtttattttctgacgctgttcctctagttagtccatcttgtgttcagtgagagatcccacaagtgcttgtgacattctcagcaccggcatctataaagacccccggtttgtgcgattgtcatcttttcttgctttcctgctgctgtcatggccctgctgagagtgtcttcctaccgtaagctgtttgaggaggagcggtggagccaggctgcaggacgctgtggagtccaggccagcttcactgccaggggtggagtttcagtgcgtgaatgtcccgagctggattttgctgcagctcgtgccctaaacaaggagggtgtggcacgatttgtctatgaacgctctgtcattgctgccctcaacgatcgcctggccggccttatcgacgtggttcggtgtctagaagaggagaatgaatctttggaggctgagattattgagctggaggagaggctggggtcagagcagatgtccaccaccaccgtcagcatcagcggtcctgtggactacagtctggaggctgtgatagagaggctacagaaagagaaggaggagattttatgcaacacggaggagctgaagggtgagctgcggcgtctgcagatgaaatatgatcaggtggttgagcacaagagactcatccagcaagagcgagaagatgtttctgtggaggtggatgcaattaccactgactgcctggcccttcgagagcaagtggccatctatgaggagcagctggctgccatggagaggcagcatgagacgaggctggagaaattgtgtgagcccaggactccggatgaaggttctcctactgtatccctgcagttcccctcctttgatatcactccagccatcatgggcatcaaggagtattatggcacactagttgagagcctcaagtttgagttcagagcctcgagtgctgccgccatcgatgccgcaggaaaggagaaggaggagcagctggctgagttgacaggagggaaagtgaaggacatctccaaagagactgacgtgaatgtcctcaagaacttgattgcagagctgcagaaagaggtggcagagctggagaagcgtggagacgagttggaggctgaaatagaagccaggaaagccaaatatctggaggaaatagagaagctggagaattacatttgtcagctggaggaggaggaggctgatcttcagttccagatgaaggatcagagtggggattatgaagaactgctgaatcagaagatgaatctagacatagagattgctgcttacaggggtttggttgaagaagaggaggagagactgagctgcctgtaagatgtaagaagaggtgatgctttcttctggactgaagcaaacacaaagaaacactaaaaccacatacaattcaacccttaacagcgagtctcacaaatcaggaaagtaaagaaaacagctgtcagacacacttaaccttctgagcagatgtaaaccttcactgacagatgaacttcagggagttcgtgcaagctcattgataacgggtcagtggcaggtaacctcgggtcttcaagaatcactggatctgtgcagcagtgggagtgtgttgagagtgatgggggattttcagcactggaatcttctatttgaagtttcatagtccctgtcactgaaacacatacataccctactgttgaaatgtttggggtcagtaagatttattttcttttttttttaagaaacacagtacagtttatgcagcaaggatgcattaaacaaaagtgatgataatgacatttataatgttaccaaaaacttctgtttcaaataaatgctgaacgttctattaatcaaagaataattttcatgcataattttcttccaaaatattaagcagcacaactcttttcaacattaataataagaaatgtttcttgagcatcaaatcagcatattagaatgatttctgaaggatcatgtgacgctgaagaccggagtaatgatgctgatgagaaattcagctttgtgaacacaggaataaattacattgttaaatatactgaaaaaaaaaaaaagttactttaaattgtaatatttcacaaagttacctttttttttttttttatcaaataaatgcagacttggtgagtgtaagagacttcttttaataacattaaaataaatcttaccaaccccaaactttccttgtgctctgttgaatcttaacctttcctgtacggtccaaacattgttttagagcatttacatgcactttaaaagtttcagtcggaataaaaaaataatttgtctcttttttttttttactgctttagtctgactgaaattgcaccggcacggttttgttgttcggactcatgagacataggtaatgaaattgttgcttgatttcatccaccttatatccgcactaccagtgtattcaatccttcagatattcaattacgtatttatgtcatgtatacatggacagaaaagaaaatgtagcttgactattcaaaattatgccaaaaaaaaagttggatataaacttaccgacggacacttagttagacaaaaattgtcttcaatgtaaaattcattgacttgttggacattttgcctgtcttttatcaactgcagctcgttttaaattgaaaatactgactctctttgatgcaacaacttacaccatttaaataaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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