2024-09-08 09:24:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_058765021 1908 bp mRNA linear VRT 08-AUG-2023 DEFINITION PREDICTED: Onychostoma macrolepis vimentin (vim), mRNA. ACCESSION XM_058765021 VERSION XM_058765021.1 DBLINK BioProject: PRJNA999377 KEYWORDS RefSeq. SOURCE Onychostoma macrolepis ORGANISM Onychostoma macrolepis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Acrossocheilinae; Onychostoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081178) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_012432095.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1908 /organism="Onychostoma macrolepis" /mol_type="mRNA" /isolate="SWU-2019" /db_xref="taxon:369639" /chromosome="24" /sex="female" /tissue_type="muscle" /dev_stage="adult" gene 1..1908 /gene="vim" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 108 Proteins" /db_xref="GeneID:131533035" CDS 136..1503 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_058621004.1" /db_xref="GeneID:131533035" /translation="
MASRTNASSYKRMFGGERPAILRSAYTSRQYSSPVRTTSRVTYSGSSSASPSIYMSKSARVRSSAPMPRLTTDTLDFGLADAINIEFKANRTNEKAEMQHLNDRFASFIEKVRFLEQQNKILNAELEQMRGKGSSRIGDLYEDEMRELRSIVDQLTNEKARVEVDRDNLGEDIERLKEKLQEEMLQREDAENTLRGFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELADLQIQIQEQHVQVDMEVSKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNEAIRLAKQEANDYRRQLQALTCDLESLKGTNESLERQMREIEDNFSMEASSYQDTIARLEDDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPFPNFSSLTLRESMKETRPAMDSLSKKVVIKTIETRDGHIINESTQNDDLE"
misc_feature 148..411 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:461414" misc_feature 412..1338 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:459643" ORIGIN
tatgtcattagcatagggagtggactataaatgcaagcagaatcgctgcagtggtctcgtttggtctggacagggcgcggtagttcgtgaaagtagacgttgacttcaacaataccccagaactaaaggattacaatggccagccgcacaaacgcatcttcttacaaaaggatgttcggtggagagcgaccagcgattcttcggtccgcttacaccagccggcagtacagcagcccggtgcgcacaacctcgcgcgtgacctacagcggctcgtcctccgcgtctccatccatctacatgagcaagagcgcgagggtgcgcagcagcgcgccgatgcccagactcaccaccgatacgctggacttcgggctcgcagatgccatcaacatcgagtttaaagccaaccgaaccaatgagaaagcggagatgcagcatctcaacgacaggtttgccagtttcatagagaaagtgagatttctggagcagcagaataagatcttgaacgcggagctggagcagatgcggggcaaaggctcgtcccggatcggtgatctgtacgaggatgagatgagagaactccggagtatagtggaccagctcaccaacgagaaggccagagtggaggtggaccgggacaatctgggagaggacatcgagcgcctcaaagagaaacttcaagaagagatgctccagagagaggatgcggagaacacccttcggggcttcagacaggatgttgataacgcctccctggctcgtctggacctggagagaaaggtggagtccttgcaagaagaaatcgctttcttgaagaagcttcatgatgaggaacttgccgatctgcagattcagatccaggaacagcatgtgcaggttgatatggaagtgtccaaacctgacctcaccgctgccctgaaagatgtccggcagcagtacgagactctggcttccaggaacctccaggagtctgaggactggtacaaatccaagtttgctgacctgtcagaagctgctgcccgtaacaatgaagcgatccgtctggccaagcaggaggccaatgactatcgccgccaacttcaagctctcacctgcgacttagaatctcttaaaggaactaatgagtccctggagcgtcagatgagagagatagaagataacttctccatggaggcatccagttaccaggacaccatcgctcgtctagaggacgacatccacaacatgaaggatgagatggcgcgtcatctacgtgaataccaggatctgctgaacgttaaaatggccctggatattgagatcgccacctacaggaagctgctggaaggggaagaaagcaggatcaccacaccatttcccaatttctcatcattaaccctgcgagagtccatgaaggaaaccagacctgcgatggacagcctgtcaaagaaagtggtgataaagaccatcgagaccagagacggacatataataaacgagtccacccaaaatgatgatctggaatgagccgcatgtgaacatgtgactagtaggggcaccagagagctgaagacccatgctggagtagaacgagaaggaatggagtttcttttgttgtttctgttgagagtaaaaaagaaaaacagctttaaagtgccttttttgcattgccacattagagcagtctgtcgatagagctgtattagagctgaaaagataacgtaggccactgaataaaccagctttatccaggtttatgtttaccacgatgtctgtagtttacactgttgaagaccacagcaatactgctacacctttttctgttttgtataattattgcaaatgaccaaaaacttgatgaactcgtctctcttgcaccataagaagaccaaactgtcaacaaatttccacaaattcaataaaccttttaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]