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2024-07-15 04:34:47, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_058417915            2141 bp    mRNA    linear   VRT 23-JUL-2023
DEFINITION  PREDICTED: Hemibagrus wyckioides vimentin like (viml), transcript
            variant X2, mRNA.
ACCESSION   XM_058417915
VERSION     XM_058417915.1
DBLINK      BioProject: PRJNA996633
KEYWORDS    RefSeq.
SOURCE      Hemibagrus wyckioides
  ORGANISM  Hemibagrus wyckioides
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Bagridae; Hemibagrus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_080729) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_019097595.1-RS_2023_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/20/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Hemibagrus wyckioides"
                     /mol_type="mRNA"
                     /isolate="EC202008001"
                     /db_xref="taxon:337641"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="sexual maturity"
                     /linkage_group="LG20"
     gene            1..2141
                     /gene="viml"
                     /note="vimentin like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 Proteins"
                     /db_xref="GeneID:131370565"
     CDS             78..1436
                     /gene="viml"
                     /codon_start=1
                     /product="vimentin like isoform X2"
                     /protein_id="XP_058273898.1"
                     /db_xref="GeneID:131370565"
                     /translation="
MTTISSTTISSYRKRFGNEGRTSSRRFASPKGARGHSDAPATLYASGKTTGAWSGTASAAAETHDINLSGAVSADLARANEKAQMQSLNNRFVSYIEKVRVLEQRNEALRAELERWRGNGPTRLAELCAHEVADLRRHVDKLTNEKAIAEVQRDNFLVDIKRIRAKLQEEILLREEAERSTQSFRQDVDIAALARVDLERKVESLQDELRFLKKLHEEELREIQAQSQQQQQGCVDLNVSQPDLTSALREIRVQYENLASKNAHGSEDWYDSKPYLSWLKSLHIVDMDLQFSDLTEAANRNKEVLRAARQEANESQRQVQALTCEVDTLKRTNESLELQMRQMEENFALESSAYQDTIRCLEENILNLKDEIARQLHEYEDLLNIKIALDIEIATYRKLMEGSHSLCQTSQPLTLRDHVLESRTSTKVLIKPTESRDGEVVNESTQNHEEPE"
     misc_feature    315..1283
                     /gene="viml"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      
gggtccggagaaaggaacggagcgttcctttctttttttttattcattttcctttttctttttaataacgcatcgtcatgacgaccatctcctccaccaccatctcgtcctaccgaaagcggtttggtaatgaaggcaggacctcgagtcgccgctttgcgagcccgaagggcgcgcgagggcattccgacgcgcccgcgacgctctacgcgagcggcaagaccaccggagcgtggagcggaaccgcgtcggcggcggctgagactcacgacatcaacctgtccggcgccgtgagcgcggatttggcgcgcgccaacgagaaggcgcagatgcagtcgcttaacaaccgcttcgtcagctacatagagaaggtgcgggtgctggagcagcgcaacgaggctctgcgcgcggagttggagcgctggcgcgggaacggacccacgcgcctcgccgagctgtgcgcgcacgaggtggccgatctgcggcggcacgtggacaaactgaccaatgagaaagcgatagccgaggtacaacgggacaacttcctcgtggacataaaacggatccgagccaagttgcaggaggagattctcctgagagaggaagctgagaggagcacacagagcttcagacaggatgtggacattgccgctcttgctcgagtggacctggagaggaaagtggagtcccttcaggacgaacttcggttcctcaagaagctccatgaagaggagctgagagagatacaggctcagagtcagcagcagcagcagggttgtgtggatctgaacgtgtctcagcctgatctgacctcggccctgagggaaatccgggtgcagtatgagaatctggcctccaagaatgcgcacgggtctgaggactggtacgactccaagccctacttgtcatggcttaaatccctccatattgtggatatggatttgcagttttccgatctcaccgaagccgcaaacagaaataaagaagttttgcgagcggccaggcaggaggccaacgagagccagcgccaggtgcaggctctgacctgtgaggtggacaccctcaagaggacaaatgagtctctggagctacaaatgagacaaatggaggagaactttgctctggagtcctcggcttatcaggacaccatcaggtgtctggaggagaacatcctgaacctgaaagatgagatagctcgacagctgcacgagtacgaggacctgctcaacatcaagatagcactggacattgagatcgccacctacaggaagcttatggaaggatctcattctctttgccaaacttctcaacccctcacactgagagaccatgtgctggagtccagaacctccacgaaggttctcatcaagcccactgagagcagagatggagaggtggttaatgagtctacgcagaaccacgaagaaccggagtgacctaccttcttccctgcttcgattcacacctcgtccaaacacacaacacacgacacacagcagcatcatccgtccctgtgaggcctacagaaataaccgctgtccctctgctgctactttccagcactttttccactcaggagttaaccgagttctttctccagatattaatgtcacagtaataacgtcggattaatcagaaatggcagaattttcacttttttaaatgtatgtttatatactgagatgattattttaaccattttatttcaaacctcactcttttaaaaaatttaaatattaaaaaataataataataaaataaataaatacaattaaattaaatttaaaaaataaaataaaaaatatagagtaatattagatgaattattttatgtttaagtcaaagtgattaaagatgagatccagactcagagaaaataataatttagcttttaataatattattttaactgatttattaggaattaagagtagataagcaggttcacaggtacaggggaaatgtttaacatataggatcaaatcatgttaaaaaaataataaaattgataagaatataaagtatatcatgttactgattcatcataacagtaatgattttagagcgaaaaaactatatattttattcttaatggttcaaggttcatgatttgtcacatatatattacatataatgaaata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]