2024-04-28 23:38:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056590091 4015 bp mRNA linear VRT 30-MAY-2023 DEFINITION PREDICTED: Gadus chalcogrammus NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_056590091 VERSION XM_056590091.1 DBLINK BioProject: PRJNA975890 KEYWORDS RefSeq. SOURCE Gadus chalcogrammus (walleye pollock) ORGANISM Gadus chalcogrammus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079416) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026213295.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/25/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4015 /organism="Gadus chalcogrammus" /mol_type="mRNA" /isolate="NIFS_2021" /db_xref="taxon:1042646" /chromosome="5" /sex="female" /tissue_type="Muscular tissues" /dev_stage="adult" gene 1..4015 /gene="nrde2" /note="NRDE-2, necessary for RNA interference, domain containing; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:130382378" CDS 47..3631 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_056446066.1" /db_xref="GeneID:130382378" /translation="
MALFPAFAEVTATNLDDSSKDWLTNKSFRADDALALNERALKASRSQNQDDSREVSSEEEKEEEEEEKKTRGEEDDKPPKKKKKKKEKKKKKKKHKKRDRSSSVSSGSGSDTVYPSDLKREQEREREKPAPLASRFSWLDDVRSPTERPFCVDNKPDQANWTYKSLYRGDVARYRRKGSSSLGLDPRFQAITWEESEQSAKKKKKADVKRRRADRYFSKDSQELLRAEPAVPSLPRIGAGDEPPRIIDFITLAGEGGLSRGETAGRVLTSPANPLGVYDAGTALWAQGKGKQEAPEDQSQATAQDQRVASLSEKTGDYNRRLREEPGDTQLWMEFIHYQDEQSETVFGGGGEPDSAERRRASYRGVVEKKLSVAERAVALNPSCVALQLERLRLCRELWEPAALAKEWKKLVFLHPNSPSLWREYLLFTQSHFSTFTVSRVNAAYGKCLSTLSAVQDGSMVSHLAIAGTEEEMLDLFIQQCHFLRQCGHSEKAVSLFQAMMDFTFFKPDTVRGLPTRQQVEFFEPFWDSGEARIGEVGARGWKAWMLQQERGGWLQPSAEDDEDEEEEEEELKDRERPRWELWLNVESSREATHWLPWRPEKGQTVEDCEDPDRQVLFDDIGPSLIHLASPELQRRLLLSFLSFMGMPVDSVLLGAPCQSSLLMEDLTLLTQGNDPQRPLSGYDLQNTGVHTVGHMTTLQGSRKWAGLGKQGEEFLTNAFHLLLPQLAPPHRAALSLCWIRYEKLKVLRCLCGGSKKRLRSQGKSSKRVAKRLLKEPDNRSALALWREYGHLEWLLGNADDARKVFSAATAMGGAKGLGCPALCDLCLLWAQLECEEGAGEGRKGGPGDATSAPAVGVLTRLAEGTPSAPGAAAPTPVAVLKARRTYEQALTDRLAALEKDLRKWGEGKKGDGPKLRGLVGCYALYQHLTVGVQATNAVYGQAREGTEGLHGALTLASDNHAGASGGPGAAGTEAGRLCAQRLAFECEALAVQHAALLRYHLSTSVFPLATLRHALTSSLSAWPQCAPLWTVYLQVENRYHSAGRARRFFHSVTRGRKDIVPRLFAIVAEQQRKQLVDATQRFESHDGALPILPENGLGNRIRGLFGNALLSEMGAHCPLLWRMYMHFLVSEGKLDNAKAIFYKALQNVPWSKGLYMDAVQLFPGHLQEFVDLMTEKELRLRLPLEELDILLED"
misc_feature 491..>751 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 998..1984 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gacgccgtcttcctgcgaccataacgctgttcataatatcaacaacatggctctgttcccagctttcgcagaagtcacggccacaaacctggatgattcttccaaagactggttgacaaataagagttttcgagctgatgatgcattggctctcaacgaacgggctttaaaggccagcagaagtcagaaccaagatgattcaagggaggtgagctctgaggaggagaaggaggaggaggaggaggagaagaagacgagaggggaggaggatgacaagcctcccaaaaagaagaaaaagaagaaggagaagaagaaaaagaagaaaaaacataagaagagggacaggagctcttcagtcagtagcgggtcgggctctgacaccgtttatcccagtgacctcaagagggagcaggagagagaaagggaaaagcctgctccgctggccagtcgtttctcctggcttgatgacgtgcgttcccccactgagcggccgttctgcgttgacaataaaccagatcaagctaactggacctacaagtccctgtacaggggggacgtggccaggtacagacggaagggctcgtcctcgctgggcctggaccctcgctttcaggcgattacttgggaggagtcggagcaaagtgccaaaaaaaagaagaaagctgacgtcaagaggagaagggcggaccgatacttttcgaaggatagtcaggagctgctgagagccgagcccgctgtgccatcactgcccaggatcggagcaggcgatgagccgccccgaattatcgactttattaccctggctggtgaaggaggattaagcagaggagagactgcggggagggtgctgacgtcgccggcgaaccccctgggcgtgtacgatgccggcacggccctgtgggcccaggggaaggggaagcaggaggcccccgaggaccagagccaggccacggcccaggaccagagggtggccagcctgtctgagaaaaccggggattacaacaggcgcctgagggaagaaccaggagacacacagctatggatggagttcatacactaccaggatgagcagagcgagacggtgttcggcggcgggggcgagccggactcggcggagcgccggcgggcgtcgtaccgcggcgtggtggagaagaagctgagtgtggcggagcgggccgtggccctcaacccgtcctgcgtggccctgcagctggagcggctgcggctctgcagggagctgtgggagcccgccgccctggccaaggagtggaagaaactggtgttccttcaccccaacagcccctccttgtggcgggagtacctgctgttcacccagagtcacttcagcaccttcaccgtgtccagggtcaacgcggcctacgggaagtgtctgagcacgctcagtgcggtgcaagacggcagcatggtgtctcacctggccatagcaggaactgaggaggagatgttagacctgttcatccagcagtgtcacttcctgcgacagtgtggccactctgagaaggccgtgtcactcttccaggctatgatggacttcaccttcttcaagcctgacacggttcgaggattgcccaccaggcagcaggtggagttctttgagccgttctgggacagcggggaggccaggatcggtgaggtgggggcccgagggtggaaggcctggatgcttcaacaggagagagggggctggctccagcccagtgcagaggatgacgaagatgaggaagaggaggaggaggagctgaaggatcgggagagacccagatgggagctctggctgaatgtggagtcttccagggaggcaactcattggctgccctggaggccagaaaagggccaaacagtggaggactgtgaagacccagacagacaggtgttgtttgacgacatcgggccctcgttgatccacctggcgtccccagagctccagcgccgtctgctcctctccttcctgtccttcatggggatgcctgtggactctgtgctcctgggtgccccctgtcagagcagcctcctgatggaggacctcactctgctcacacagggcaacgacccccagcgacctctgagcggctacgacctccagaacacgggagtccacacggtgggtcacatgacaacgctgcaggggtcaaggaagtgggcggggctcgggaagcaaggggaagagttcctcaccaacgccttccatttgctcctcccacaactggccccgccccaccgggcggccctgtccctctgctggatacgctatgagaaactcaaggtcctgcgctgtctctgcggtggcagcaagaagcgcctgcgctcccagggcaagagcagcaagcgcgtggccaagcggctgctcaaggagcccgacaaccgctccgccctggcgctgtggcgggagtacggccacctcgagtggctcctgggcaacgccgacgacgcccgcaaggtgttctcggccgccaccgccatgggaggagccaaggggctgggctgccccgccctctgcgacctctgcctgctgtgggcccagctggagtgtgaggagggcgccggggaggggaggaagggcggccccggggacgcgacctccgccccggccgtgggcgtcctcacccggctggcggaggggaccccctccgcccccggggccgcggcgcccaccccggtggcggtgctgaaggccaggaggacttatgagcaggccctgacggaccgtctggctgccctggagaaggacctccgcaagtggggagagggcaagaaaggagacggaccgaagctaagaggcctggtgggctgttacgccttgtaccagcatctgacggtcggcgtgcaggcgaccaacgcggtgtacggccaagctcgggagggaacggaggggctgcacggggcgctgaccctggcctctgataaccacgccggcgccagcgggggtccgggcgccgccggcacagaggccggcagactctgcgcccagaggctggcgtttgagtgcgaggcgttggccgtccagcacgcggcgctgctccgataccacctcagcaccagcgtgtttcccctggccacgctgagacacgccctcacctcctcgctctccgcctggccccagtgcgcccccctctggaccgtttacttgcaggtggagaaccggtaccacagcgcaggacgggcccgccgcttctttcactcggtgacccggggacgcaaggacatcgtgccacgcctctttgctattgttgccgagcaacaaaggaagcagctggtggacgcgacccagcggtttgaatctcatgatggcgctctacccatcttgccggaaaatggccttggcaaccgtatccggggcctgtttggaaacgcccttcttagtgagatgggtgcccactgtcctctactctggcggatgtatatgcacttcctggtatcggagggtaagctggacaatgccaaagcgatcttctacaaggccttgcagaacgttccctggtctaagggtttgtacatggacgcagtgcagctattccccggacacctccaggagtttgtggacctcatgacggagaaggaactgcgtctcagactgcccctagaggagttggatatactacttgaagattgaatgaacaagcagacattcatgtgaacaaaatgttattcattcttagcctaaaaataatttgatgagaaaggttttttttccatgtatataggtacatcaaatatactttttgagaattggaataaaagtgttttttagaactggtgtttttttttttgtattttcgttctgttaaaccaggtatgtatggacaaaataagcatacagtacttaaatgtaatgttagatcgtctagatgaaataaacataacattaagaaagaacctcaaataaaagtataaataataaaacccaccacgaacgaagacgcacaaagcagaaagatattttaaataatttaaatgttccacaaaacgttttgaacgccaattattcgacttttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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