2024-04-28 20:42:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_056173154 3165 bp mRNA linear PLN 19-MAY-2023 DEFINITION Trichoderma breve NRDE-2, necessary for RNA interference domain-containing protein (T069G_05944), partial mRNA. ACCESSION XM_056173154 VERSION XM_056173154.1 DBLINK BioProject: PRJNA973574 BioSample: SAMN30971524 KEYWORDS RefSeq. SOURCE Trichoderma breve ORGANISM Trichoderma breve Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma. REFERENCE 1 (bases 1 to 3165) AUTHORS Lin,R. and Liu,T. TITLE Chromosome-level assembly of Trichoderma breve T069, a fungus used in development of biopesticide product JOURNAL Unpublished REFERENCE 2 (bases 1 to 3165) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (18-MAY-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3165) AUTHORS Lin,R. and Liu,T. TITLE Direct Submission JOURNAL Submitted (23-SEP-2022) School of Plant Protection, Hainan University, No 58, Renmin Avenue, Haikou, Hainan 570228, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_079234). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3165 /organism="Trichoderma breve" /mol_type="mRNA" /strain="T069" /isolation_source="soil" /db_xref="taxon:2034170" /chromosome="3" gene <1..>3165 /locus_tag="T069G_05944" /db_xref="GeneID:80867842" CDS 1..3165 /locus_tag="T069G_05944" /codon_start=1 /product="NRDE-2, necessary for RNA interference domain-containing protein" /protein_id="XP_056030012.1" /db_xref="GeneID:80867842" /translation="
MASPDEQDVKLSVPKFSSFKSKDARKENPQKLEKQHEIRRKRHDRDDERSSSRRSHEDRGSRRSGQESRRHRDRDRDLDRDRDRTRREPSIQGVPGLFVIDTNGDPLIIKYGGIDRSQVPAYRRYGGGRVLGTEGRLVIHRDGPRDQFSLRMPGEGFHTFSGRDGLRSKMPRVESRPIRALTRRSDADVADEAEGYLSLSSSKKRKRDQRDEESSDDERPSYRDSDEDSDMSIDMLAADRSNPLKQKSIRLSKQVKDTPEDIDAWLELVDHQDALLKAGEDLDHAVLENEAHSFAEIKVYMLESALKNTQSVKDRRRVLVYLMREGAKVWTSKVTMKKWSEVLESDDDDFPLWKTHLDFLTSNITTFQYDDIKKLLLDRLCLTLSRLTSDQPKEAIEEAIFVFLRATRFIHDAGYKELAIAAWQGLLELSFFRPLSMESEQSALESFHDFWESEVPRIGDVGAKGWRHYVETGSDDDAAEPVQAAQIAPSSSRDVYKAWAHLEHSRSQAAKMPARTMDDGTDDDPFRVVMYSDIQPLLFLIPSSVLPEVSTQLIDAFLLFCGFPPAFRASSWTEMAYGDQFVSSSLIRVDLQPVKHNDDETENWHKSEPRFGMGVKAAASTHLLFGGSRWFQYVPANSQNPIVSSLWASEALRQLVHIGGMEELAQYYLATVFSNEQTSVKKPAKALLKQYPANSELYNAYAVAESANDLSVASRVLGAAIESSSLSSKWHKFLFHGSWSWMEFEAGNIDLAKVRLCASVDENLKVTGSDILEIGSTTLLKAHQTFISDFHEYLLGRDLVGASVLAECMILLSYLTASGNLEPASISQGNIAAAMNTVDMISQEFRSQDQAGSAVHERVLQYASRLLYLHASKGPFRRVYLREKLSGFIRQFPQNSVFLSMFEWSDASLRVIDETRGLLYDQVLVKQHDCISSRVFAIQHELTHGNANTAKIAFEQALASDTCQNSPALWIFYIRFCQMQFCTKAKDVFYRALRHCPGSKEVMMEAFFTLLRNMESEELRAVYNTMTSKGMRVHVDMEEFLERRRAESLREKKR"
misc_feature 751..1686 /locus_tag="T069G_05944" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atggcctcaccagacgagcaagacgtaaagctcagtgtgccgaaattctcctctttcaaatccaaggatgcacgcaaagagaaccctcaaaagcttgagaaacagcatgagattcgccgcaagaggcatgatcgtgatgacgagagatcaagcagccgccggtctcatgaggatcgcggctcaaggcgcagtggccaggagtctcgtcgccatagagaccgcgaccgggatctagacagagacagagatcgaactcgtcgagagccttctattcagggtgttccaggcctctttgtgattgatacaaatggcgaccccttgattataaaatatggcggcattgacagatcacaggttcctgcttaccgtcgctatgggggcggcagagtccttggtacggagggtcgcctagtcatccatcgtgatggcccaagggatcagtttagtctccgcatgccgggcgaaggcttccacacattttccggtagagatggtcttcgatccaagatgccaagagtggaatctagaccaatcagagcactcaccaggaggagtgatgctgatgtcgcggatgaggctgaaggatacctatccttgagttcatctaaaaaacgaaagcgtgatcagcgagatgaagagtcctcggatgatgaacgcccttcatatcgtgactcggatgaggactcggacatgtcaatcgacatgctggcggcggatcggagcaatccactgaagcaaaagtccataaggctcagcaagcaagtaaaagatacaccagaggatatcgatgcctggctagagcttgtagatcaccaagatgctttactgaaagccggagaagatctggatcacgcggtattagagaacgaggctcatagctttgcagagattaaagtatacatgctcgagtcggctcttaagaacacacagagtgtaaaagaccgcaggcgagttctcgtctacctgatgcgagagggtgccaaagtgtggactagcaaagtgaccatgaagaaatggtcagaagttctggaaagtgacgacgatgatttccccctgtggaaaactcaccttgactttttgacgtccaacattacaacatttcaatatgacgacatcaaaaaattgcttttagacaggctatgccttaccctctcccgcctgacatcagatcaacccaaagaagccattgaagaagccatatttgtgttcctgagggccactcgtttcatccatgatgctggctacaaagaactggctattgcggcgtggcagggtctcttggagctcagcttctttagacccctgagcatggaaagcgagcagtctgcgctagagtcgttccacgacttctgggaaagcgaggttcctcggataggcgacgtcggcgcgaaaggttggagacattacgtcgaaactgggagcgatgatgatgccgcagagccggtacaggctgctcaaattgcaccctcttcctcacgagatgtttacaaagcctgggcccatcttgagcactctcgctctcaagccgcaaagatgccagcgaggactatggatgatggcacagatgatgatcctttcagagtcgtaatgtactctgacatccaaccacttctctttctcataccaagttctgttctaccagaggtttcgacgcagctgattgatgcatttctactcttctgtggctttcctccagcatttcgagcaagtagttggacggaaatggcctatggcgatcagttcgtctcatcgtcgctcatcagggtcgacttacagccagttaagcataatgacgacgagacagagaactggcataagagcgaaccgcgatttggaatgggcgtaaaggcggccgcttctactcatttactgtttggcggctcaagatggtttcagtacgttcctgccaactctcagaatcctatagtgagctcgctctgggcatcagaggcactgaggcagcttgttcacattggggggatggaagagctggctcaatactaccttgctacagtcttttcgaatgagcaaacgagcgtcaagaagcctgctaaagccttgctcaaacaatatcccgcgaattccgagctttataatgcatatgcagttgctgaatctgccaacgatctcagtgtggcgagtagagtgctgggggctgcaattgagtcttcgtcgctgtcttcgaagtggcataaattcttgtttcatggaagctggagctggatggagtttgaggcgggaaacattgacttggcaaaagtgcgtctctgtgcgtccgtagatgagaatctgaaggtgacggggtcggatatcctcgagattggcagtaccacgcttctcaaagcccatcaaacatttatttcggatttccacgaatacctactcggtcgagacttggttggagccagcgtactcgccgaatgcatgattttactatcatatctcacggcatcgggaaatttggagcccgcgtcaatttcacaaggcaatatcgctgctgcgatgaacactgttgatatgatatctcaagagtttcggtcccaagaccaagccggctccgcggtgcacgagcgtgtccttcagtatgcttctcggctgctatatctgcatgcatcaaagggaccattccggagagtgtacctgcgcgagaagctgtcaggtttcattcggcagtttccgcagaattcagtcttcttatccatgtttgaatggtctgatgcgagccttcgggtcattgacgagacgcgtggccttttgtatgaccaagttctagtgaagcagcatgactgcattagcagccgcgtgtttgccattcaacacgagcttacacatggcaacgctaatacggcaaagattgcatttgagcaagctctggcgagtgacacctgtcagaacagtcccgcattgtggattttttacattcgattctgccagatgcagttctgcacaaaggcaaaggatgtgttttaccgggctttgaggcactgccctggatcgaaggaggtgatgatggaggctttttttaccttgcttcgtaatatggaatcggaggagcttagggcggtgtataacaccatgacgtcaaaggggatgagggtgcacgttgacatggaggagtttcttgagaggcgtagggcggaatcattgagagagaagaagagatga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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