ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-03-05 04:34:54, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_056151036 8631 bp mRNA linear INV 18-MAY-2023
DEFINITION PREDICTED: Ostrea edulis two pore channel protein 1-like
(LOC125664453), mRNA.
ACCESSION XM_056151036
VERSION XM_056151036.1
DBLINK BioProject: PRJNA970818
KEYWORDS RefSeq.
SOURCE Ostrea edulis (European flat oyster)
ORGANISM Ostrea edulis
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Ostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079164) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_947568905.1-RS_2023_05
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 05/10/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..8631
/organism="Ostrea edulis"
/mol_type="mRNA"
/db_xref="taxon:37623"
/chromosome="1"
gene 1..8631
/gene="LOC125664453"
/note="two pore channel protein 1-like; Derived by
automated computational analysis using gene prediction
method: Gnomon. Supporting evidence includes similarity
to: 24 long SRA reads, 6 Proteins"
/db_xref="GeneID:125664453"
CDS 32..2494
/gene="LOC125664453"
/codon_start=1
/product="two pore channel protein 1-like"
/protein_id="XP_056007011.1"
/db_xref="GeneID:125664453"
/translation="
MKTNMAGDGERPLRSLQENRRTSSLSESEYEIVNDTGNMGYEFPIRENMSRRENKRLWDLNYQEAAIFLQEGENNDKFYTHPRSFSALPAYQIAHHQWFKVLDLVAALGLLFLAACERPAVPFLTLPVGVHGSLEILGQLILTLQLAIKLRWLGWKTFFRHKRTSIKSATLLIMFIESVVVLIRQTNHFRVTRALRPLFLIDTHHFRGVRRISRQILMSLPPILELIFLLMFFILIFSILGFYLFSQVPNDTYFSTLQDSFISLFVLLTTANFPDVMMPAYADSPWNAAFFIVYLALVLYFLMNLLLAVVYDTFSNLEKRKLKRLYFHKRTGCQHAFKLLVTQQDRNKVSIRNFMGMLKYLKPNKKRLDAYLSFKTLNTSKVGKLSLEEFYNVFSVLDLQWEPKQDEFKIWSTHFKHPFNFIFKKLHDFVNWRWFEVFIYFVIAANFIWILVETITLSKQNINVKHYNFTITWASIIFICIYTIEASVKILAKGPLEYFTTGWDLFDFLVTVTSVIGLLGEYFNDSFFYITVLRPFRLLRLFRMKRSYRDVLGTLFILFSRLISLVVVIMLVYYFFAIVAMECFLYVDLRNCCKNSSVEAFYRYSNESSSLGYYYLNDFRNILISGVTLFELTVVNNWFIIMEGFAHHIGEVSRTFFMTFYLVMMVVMTIVVAFILELFLFRIQYRRKLKLEDIDDHAKQIEHVYLSDEEKEMCENSDHKWTGRYIVLQKDSTDLQTPYLYRGERTRNKIDFSLRMHGDEVKSWLEEEQENRDQTIHTMTELRRRSRPNADLEDLDEDVIPNSSFCNPMAENLQDEMSRS"
misc_feature 431..994
/gene="LOC125664453"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1325..2017
/gene="LOC125664453"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
polyA_site 8631
/gene="LOC125664453"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
ggaacacccctttttaaattgttccgaatgaatgaaaacaaatatggcgggtgatggagaacggcctcttcgctctctccaagaaaatagaagaacgtctagcctgtcggagtctgaatatgaaatcgtcaatgatacaggcaacatggggtacgagtttcccatcagggaaaatatgtctcggagagagaacaaaaggctgtgggaccttaactatcaggaggcggccatatttctgcaggagggggaaaataacgacaagttctatacccaccccaggagcttcagtgccctgccggcctaccaaatcgcccaccaccagtggttcaaggttctggaccttgtggctgccctgggtctcctcttcctagccgcttgtgaacgaccagctgtgccctttcttactttacctgtcggggtccatggatcgttagaaatcctgggacagctgatcctaactctccagttggctatcaaattaaggtggctcgggtggaaaacattcttcagacacaagagaacatccatcaagtctgctactcttctgattatgttcattgagtctgtcgtggtgctgattcgacagacgaatcatttccgagtcacgagggcgctcagaccactttttcttatcgacacacaccacttcagaggagtcagaagaatcagtcgacagatattgatgtcgttgcctccgattttggaactcatctttcttctcatgttcttcattctgattttttccatactagggttttacctgttttctcaagtcccaaatgacacatatttcagcacactccaggacagcttcatcagtctctttgtcttgttgacgacagccaatttcccagatgtaatgatgcctgcctacgctgactcgccatggaatgctgccttttttatcgtatacctcgctttagtcctgtacttccttatgaatttattactggctgttgtctacgataccttttcgaatctggagaagaggaaattaaagaggttatatttccacaagagaaccggctgtcagcatgcctttaaactccttgtaacacaacaggatagaaataaagtcagtattcgaaactttatgggtatgctcaagtacctaaagccaaataaaaagagattggatgcctatttgtctttcaaaaccctgaatacgtccaaggtcggcaaactgagtctggaagaattttacaatgtattcagtgtccttgaccttcagtgggagcccaagcaagatgaatttaagatctggtcaacacatttcaagcaccccttcaactttattttcaaaaaattgcatgattttgttaattggcgatggtttgaagtgttcatttactttgttatagcggcaaattttatctggatcctggttgagacgattacactttcaaaacagaacatcaatgttaaacattacaactttactatcacgtgggcctccatcatttttatatgcatatacaccatagaagcttcagtcaagattcttgccaaaggtccacttgaatattttacaacaggatgggatttgtttgactttctggtgacggtgaccagtgtcattggtttattaggggagtacttcaacgactcgtttttctacatcacagtcctccggccatttagacttctcagattattccggatgaagagaagttacagagatgtcctaggaacgctgttcatcctcttctccagactcatcagtctggtggttgttattatgctggtttactatttctttgccatcgttgccatggagtgtttcttgtatgtggatctcagaaactgctgcaaaaactccagcgtagaagcattctatagatacagcaacgagtcctcaagtctggggtactactatctcaacgacttcagaaatatacttatatctggggtgacattatttgagctaacagtcgtcaacaactggtttataataatggaagggtttgcgcatcacattggagaagtatcacgcaccttcttcatgacattttacctagttatgatggtcgttatgacgattgtggtggcctttattctagagttgttcctcttccgtattcagtacagaagaaaactgaagctggaggacattgatgaccatgctaaacaaattgaacatgtttatctgagtgacgaagagaaagagatgtgtgaaaacagcgatcataagtggaccggtcgatatatcgtgctgcagaaagactcgacagatcttcagactccctacttgtatagaggtgaaaggaccaggaacaaaatagacttcagtctccggatgcacggcgacgaggtcaagagttggttggaggaggagcaggagaaccgggatcagacgattcacacaatgacagagctccggaggcgaagtcgacctaatgctgatctcgaggatctggacgaggatgttattcccaactcctcgttttgtaaccccatggctgagaacctccaggacgagatgtcgcggtcgtgaggaagaggggggtgtctaacccgtgattgagaatcttcagaacgaggcctcatggtcttgaggaagttttaggtgctacatttatttggcagacacattccaatgactgaggtgtgacaatcatatcaatcagtggtgcgttacgttccagttgaatgatttgtagagtgtcactgtggtgcattacgttccagttgaatgatttgtagagtgtcactgtggtgcttattgttatgcagtcgaggtaaaactctcaatcagttaacattgaaaatgtatacatgtatgtttattgctgtgatcattgttaaacagtgccaaaaactgtttgtttctattttttggtgccatttagttttatatatattacaaatggtgtttttgtgcaatccttcctcatattgaggagaattgtttaatggaaaatgctttttacaccctccgcaaagtttagggggtatactggaatcactttaactgtgtatccatcggtagacataatttgcccagagtacagatttgacactgacgaacagatttgataataagactttctgtatatcgtataatgaagttgtacacttgctgtattgattcagattcttaacattcatgaaagttatggatatttttttttcccttttgaaggatgtgtgtgtgttatgttgtcattgtccattgtatatcttagagaccatttattagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattagaaattgttcaaggcattaccctggggcaaagggcatggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggagcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacctacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcaccttgagtcaatggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcaaatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcaaagggtttcgaccaaaaagtaggtcaacttgacctactttttgaattggacacctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccagaaagtaggtcaccatgacctacgattggaatttgacagctaattttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtataatttatcagaagagcgattctaggcccttgggcctcttgtttttcattgagcacaaattcatcatttcccatcatccaatgtgtcctgctgggggtattagtcaggacagttctagtttacgtcatgaaatattttaatacagctagcatagttgtttttcttaaaattttaaatcaaactgtataagtgattgaaacatgaaagaaccagaaatacatttctggcccagaaattaaagtcatttttctatttcctttaaattcaggtatttctacattgaaaaaatcataaacaaaaataaaaatatattttttgaagttcctgaaactgattctttaaattaatatgatgtctcaaagtttgggatttttttttaactggaaaattgtcaacttttcaggcagttttatgcctaaaatcgcatgcaccatgcattaatcaaactacttgctgatatttacaaagctatgatgtaaagatgaccatatctcaaacacatcatggtctacatacatggcacaaaatttgttaagtagcattagaaaatagctagcattggcttgttgaaaggaaatggtggaaaatgtcatttgttatgatgtcatacatgtacacagtaagtccgagaattatcattagctttgtgcatcacacctatgtattaaatttattcaaacatgtctgttacctaagtacaatgtagtttatgattatggtcacaattggggccagttatgtatatttattagtgaatttagtttttgttttatcagtgttgaagtttacacggtcctgctatactgtgtacgcatgtacacagcaaagtgtcacttcaacccacgatgttggcacttggtgtaatttttgtatcaatatcagtacagattgacattatctttcaatactttcagttgtttacaaattttatgtattcaaattcacttgtgtatttctgtcagcatgccagacgccatgttgatctgtatcaccattttatgcttccccatcaaatgtccataaaattgtctcttttcatccatccattgccaaataattcttatccaaacttttttaaggttaattttttatttaaaaaaatgtccaattaattgttgaggtgttgttgaattttcaactttacttttcacgaaccacggctagtttcaaccaaacatgacacagtgtccttgattaaagggggtttaagtttcttcaaatgaaggactgtgtctcctttcaaggggagataattaggaaaccaccaatgagtgtaggatgggtattcagaaaatcatcagaattttatacggaagcttccttatatacaaaaacatgtatgttcaatcttgactaagaaacaaagttgatgaaattaatatgcaagctttgtcatgttgtgtagattcacatttgtctatcaccctcagggccaatgcagaacttcaaaagaagtttgaagtatatatataggaaaactttttaattgaatacgtggtacaatatatcaaactgatatgcaagaattttcatgcatgaactcaagtttgatcaaacggagactgcctgggtcgcaatagaggttaaaagttcactttctttaaggaattaagaatttcagaaaagcatctattcaacaagcaaagtgtacgattattttgataaacgtaaaaatgtaaatttctttaatgcatgaaactaaaaaagcacagccacgaacaggttttaaattttttactattgatgccctagctaaattaaaccgtctttatcccagtctgagcgaggtgactcagacgagtactggctgctggcagactcatgtcggatacgtctagtttattgtaatgttgttttacattctctatttatagttcggtctttatgagctcttcatttactgaactgttgcagcagattttcatgacaaacttgcaatcttaaaaaaaaatcttttgtgagggttactgagcttttcttttgacaacaaatggtatacacattgtacaacatttactttcattttcacaacaaatagtatacacattgtacaaagtttactttcattttcacaacaaatagtatacacattgtacaaagtttactttcattttcatgcaatatattttatctttgtgttcacaagtttacactcctccatctttagtcctccaacattatctttctcaggctcatttacattgttccatacaaacaatttcttaataattttcaccgaaatatatttaggttcacttgtaagttttatactttacgttcacttgtaagtttcatactttacgttcacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagttttatactttacgtttacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaactttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagtttcatactttacgtttacttgtaagttttatactttacgtttacttgtaagtttcatactttacgtttacttgtaatttaagtttcatacttttcagaaaatcttgttttgatatgacatccaaagaaaacttccaatgttccatccctatgcaatattgtgtaatattaaattgttatgtatttgaatattaatcattcattggcattaaagctacatatttaaagtatttctaaatttgtgacttagcaatttcttaaaggaaaaataaaatctcaatattttaatccttgcatttcaaattgacttgaaaatgcttcagttttaactgcacaagtctgacatagaacctgacaaaggcgtcccagaatattcaaaccttaatcagccttacctatgttgacatctgtttcatagattaattagactttcctatatcagtcttaactgtgttgtattagtacaagtacaaaattgtatgagtacattgtaatgatattgtatgagtacattgtaatgatattgtattagtacaagtacattgtaataatattgtacaagtacagccccatttcttagttgtatcctgtttaatcagttcgtggagaagtgcaatacacacacacgccatcacatacacgtcattgtacacacgtagatttaccaaatctgtcttatctaaatgtcacctttaataagccatctgattttcatgttctttatgtcagcattttcaataacatttgttcacaataactagcagcttcattatgaaattgaatacatctaataatacttgttgcagtttgtagagttattcaaaacaaatagaatgtacagttgaacctccctatctcagacactgataccccgaataccatggatatgtcaaagtgattcagaactcaaatccacttatttctgaagtattataccctcgatatgtcgaatatctttgaagttttttcttggtcccattgagttaacgaggtttgtctgtattttgtgtaaaaatattttatgatatgcactttggaatatgatggtcttgtgtagatttatacacatgtacaaataacacacatagaactttaacgtgtatatttttatacgctggaaacaataaacaatgaagaaaaacaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]