2024-09-08 09:23:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_056114551 1805 bp mRNA linear MAM 09-OCT-2023 DEFINITION PREDICTED: Sorex fumeus vimentin (VIM), mRNA. ACCESSION XM_056114551 VERSION XM_056114551.1 DBLINK BioProject: PRJNA972655 KEYWORDS RefSeq. SOURCE Sorex fumeus (smoky shrew) ORGANISM Sorex fumeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026606083) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_029834395.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/04/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1805 /organism="Sorex fumeus" /mol_type="mRNA" /db_xref="taxon:62283" /chromosome="Unknown" gene 1..1805 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins" /db_xref="GeneID:130023954" CDS 86..1489 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_055970526.1" /db_xref="GeneID:130023954" /translation="
MSTRSVSSSSYRRMFGGPGSSSSRPSASRSYVTTSTRTYSLGSSLRPSTSRSLYGASPGGAYATRSSAVRLRSAGPGLRMLHDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSEDIMRLREKLQEEMMQREEAESNLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAMEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPSFASLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 182..391 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:461414" misc_feature 392..1318 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:459643" polyA_site 1805 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cgaagtcccgtcctctgcgctccctcgctccgggtccccacgcccgattcgcagccgccgctcccagccaccgcgccccgcagccatgtccaccaggtccgtgtcctcgtcgtcctaccgcaggatgttcggcggcccgggcagctcgagcagccggccgagcgccagccgtagctacgtgaccacgtccacccgcacctatagcttgggcagctcgctgcgccccagcaccagccgcagcctgtacggcgcgtcccccggcggcgcgtacgccacccgctcgtccgccgtgcgcctgcggagcgccgggcccgggctgcggatgctgcacgactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacgcgcaccaacgagaaggtggagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctgtacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtggaggtggagcgcgacaacctgagcgaggacatcatgcggctccgggagaagttgcaggaggagatgatgcagagagaggaagccgagagcaacctgcagtccttcagacaggacgtggacaatgcttctctggcacgtctggaccttgaacgcaaagtggaatcattgcaggaagaaatcgccttcttgaagaaactgcatgatgaagagatccaggaactgcaggcgcagattcaggaccagcatgtgcagatcgacatggatgtgtccaagcctgacctcacggcagccctgcgtgacgtgcgtcagcagtacgagagcgtggccgccaagaacctgcaggaggctgaggagtggtacaagtccaagtttgctgacctctctgaggctgccaaccgcaacaacgatgccctgcgccaggcaaagcaggagtccaatgagtacaggagacaagtgcagtccctcacctgcgaagtggatgctctgaaaggaactaatgagagtctggaacgtcagatgcgggaaatggaagagaactttgctatggaagctgccaactaccaagacactattggccgtctgcaggacgagattcagaacatgaaggaggagatggctagacacctccgtgaataccaggacctgctgaatgttaagatggctcttgacattgagattgccacctaccggaagctgctggaaggcgaggagagcaggattgctttgcctcttcccagctttgcttccctgaacctgagagaaaccaatctggagtccctccctctggtggacacacactccaagagaacacttctgattaagaccgttgagacccgagatggacaggttatcaacgaaacttcccagcatcatgatgacctggagtgaaaatctcagccatctggtgcagcagtttcttaccagcagaataagaaagatccatatcataaaggaaacagctttccaagtgccttttctgcagttttttaagagcgcaagatagatttggaataggaataagctagtacttaagaaccaacatttgtaaaagatgtagacaaaaagtttacaacctaatctagtttatgaagacaacttgtgctagaatacttttcttaaaaagtatttttgaataccattaaaactgctttttttccgaacaactctgaccaacctgtctctgaataaatctttgggaaactca
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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