2024-04-29 12:48:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054970772 774 bp mRNA linear VRT 05-APR-2023 DEFINITION PREDICTED: Eublepharis macularius taste receptor type 2 member 40-like (LOC129323927), mRNA. ACCESSION XM_054970772 VERSION XM_054970772.1 DBLINK BioProject: PRJNA949696 KEYWORDS RefSeq; includes ab initio. SOURCE Eublepharis macularius ORGANISM Eublepharis macularius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Eublepharidae; Eublepharinae; Eublepharis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_072790) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_028583425.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/30/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 67% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..774 /organism="Eublepharis macularius" /mol_type="mRNA" /isolate="TG4126" /isolation_source="laboratory cross" /db_xref="taxon:481883" /chromosome="1" /tissue_type="blood" /dev_stage="juvenile" /collection_date="2020" /collected_by="Tony Gamble" gene 1..774 /gene="LOC129323927" /note="taste receptor type 2 member 40-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:129323927" CDS 1..774 /gene="LOC129323927" /codon_start=1 /product="taste receptor type 2 member 40-like" /protein_id="XP_054826747.1" /db_xref="GeneID:129323927" /translation="
MVWMSISSWAFEVTVVYQTFKAVIWLLTCISFCFSSCLCSFYCIKIANFKHHLFIRLKMGISRLVPWMLLGSVFGSLANTYPFYRDIYRITCKNNTISSALGNQTREDLTLETNLFNLFMYCGTGFSITFFISFASSCLLLFSLWRHTHLMQSTSTTFSNPSMAAHFRAVKTIMSLLIIDCINFVSLMLLLSNIFLDRSPTNRFFSTISYACPSMQTQIIIRSNPELKREFIRVADYIRHMYLVGKGIIIHAMFCRK"
misc_feature <46..687 /gene="LOC129323927" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 52..120 /gene="LOC129323927" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:410628" misc_feature 199..249 /gene="LOC129323927" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:410628" misc_feature 343..414 /gene="LOC129323927" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410628" misc_feature 496..561 /gene="LOC129323927" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410628" misc_feature 595..672 /gene="LOC129323927" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410628" ORIGIN
atggtctggatgtcaatctcttcttgggcctttgaagtgacagttgtgtaccaaacgttcaaagctgtcatctggcttctcacgtgtatcagtttctgcttctcgtcctgcctgtgttcattttactgtataaaaatcgctaacttcaagcaccatctgttcattcgtctgaagatgggcatctccaggttggtgccctggatgctcctgggttctgtgtttggatcgctggcaaacacttacccattttatcgtgacatttatcgtataacttgcaaaaacaatacaatttccagtgctttaggaaaccaaacacgtgaagatcttactttggaaactaatttgtttaatctgtttatgtactgtggcacggggttttccataacattcttcatatcctttgcatcgtcttgcctcttactcttttctctgtggagacacacccacctgatgcagagcacctccacgactttcagcaacccaagcatggctgcccattttcgggccgtgaaaacgataatgtcgcttttgatcatcgactgcattaattttgtaagtttgatgctcctgctgtccaatatatttcttgacagaagtccaacaaaccggttcttctcaaccatcagctatgcctgtccctccatgcagacacaaataattatcaggagcaatcccgagttaaagagagaattcattagagtagcagattatatcaggcacatgtacttggttggaaagggcataataattcatgccatgttttgtagaaaatag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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