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2024-04-29 12:48:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_054970772             774 bp    mRNA    linear   VRT 05-APR-2023
DEFINITION  PREDICTED: Eublepharis macularius taste receptor type 2 member
            40-like (LOC129323927), mRNA.
ACCESSION   XM_054970772
VERSION     XM_054970772.1
DBLINK      BioProject: PRJNA949696
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Eublepharis macularius
  ORGANISM  Eublepharis macularius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Gekkota; Eublepharidae;
            Eublepharinae; Eublepharis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_072790) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028583425.1-RS_2023_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/30/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 67% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Eublepharis macularius"
                     /mol_type="mRNA"
                     /isolate="TG4126"
                     /isolation_source="laboratory cross"
                     /db_xref="taxon:481883"
                     /chromosome="1"
                     /tissue_type="blood"
                     /dev_stage="juvenile"
                     /collection_date="2020"
                     /collected_by="Tony Gamble"
     gene            1..774
                     /gene="LOC129323927"
                     /note="taste receptor type 2 member 40-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 Proteins"
                     /db_xref="GeneID:129323927"
     CDS             1..774
                     /gene="LOC129323927"
                     /codon_start=1
                     /product="taste receptor type 2 member 40-like"
                     /protein_id="XP_054826747.1"
                     /db_xref="GeneID:129323927"
                     /translation="
MVWMSISSWAFEVTVVYQTFKAVIWLLTCISFCFSSCLCSFYCIKIANFKHHLFIRLKMGISRLVPWMLLGSVFGSLANTYPFYRDIYRITCKNNTISSALGNQTREDLTLETNLFNLFMYCGTGFSITFFISFASSCLLLFSLWRHTHLMQSTSTTFSNPSMAAHFRAVKTIMSLLIIDCINFVSLMLLLSNIFLDRSPTNRFFSTISYACPSMQTQIIIRSNPELKREFIRVADYIRHMYLVGKGIIIHAMFCRK"
     misc_feature    <46..687
                     /gene="LOC129323927"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:452889"
     misc_feature    52..120
                     /gene="LOC129323927"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    199..249
                     /gene="LOC129323927"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    343..414
                     /gene="LOC129323927"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    496..561
                     /gene="LOC129323927"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    595..672
                     /gene="LOC129323927"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
atggtctggatgtcaatctcttcttgggcctttgaagtgacagttgtgtaccaaacgttcaaagctgtcatctggcttctcacgtgtatcagtttctgcttctcgtcctgcctgtgttcattttactgtataaaaatcgctaacttcaagcaccatctgttcattcgtctgaagatgggcatctccaggttggtgccctggatgctcctgggttctgtgtttggatcgctggcaaacacttacccattttatcgtgacatttatcgtataacttgcaaaaacaatacaatttccagtgctttaggaaaccaaacacgtgaagatcttactttggaaactaatttgtttaatctgtttatgtactgtggcacggggttttccataacattcttcatatcctttgcatcgtcttgcctcttactcttttctctgtggagacacacccacctgatgcagagcacctccacgactttcagcaacccaagcatggctgcccattttcgggccgtgaaaacgataatgtcgcttttgatcatcgactgcattaattttgtaagtttgatgctcctgctgtccaatatatttcttgacagaagtccaacaaaccggttcttctcaaccatcagctatgcctgtccctccatgcagacacaaataattatcaggagcaatcccgagttaaagagagaattcattagagtagcagattatatcaggcacatgtacttggttggaaagggcataataattcatgccatgttttgtagaaaatag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]