2024-09-08 10:30:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_052882881 8049 bp mRNA linear INV 29-DEC-2022 DEFINITION PREDICTED: Bicyclus anynana homeobox protein PKNOX2 (LOC112051150), transcript variant X1, mRNA. ACCESSION XM_052882881 VERSION XM_052882881.1 DBLINK BioProject: PRJNA914314 KEYWORDS RefSeq. SOURCE Bicyclus anynana (squinting bush brown) ORGANISM Bicyclus anynana Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Satyrinae; Satyrini; Mycalesina; Bicyclus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_069090) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947172395.1-RS_2022_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8049 /organism="Bicyclus anynana" /mol_type="mRNA" /db_xref="taxon:110368" /chromosome="8" gene 1..8049 /gene="LOC112051150" /note="homeobox protein PKNOX2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:112051150" CDS 860..3073 /gene="LOC112051150" /codon_start=1 /product="homeobox protein PKNOX2" /protein_id="XP_052738841.1" /db_xref="GeneID:112051150" /translation="
MQGGGAPAADADQAQFEADKRAVYKHPLFPLLALLLERCEQATAGAEAPAADAFGADLQAFVQHQRRDRRPFLVDDPEIDGLMIKSIQVLRIHLLELEKVQELCRDFCGRYIACLKTKMQSENLLRTDYSAGGVESNNNLSGTMDDHSSTSNSPQYQSPAAPLSAASFPPVYPAVSDLPFAPHRDQPPLVVQGSTPIGQIGAGLLSTDSFTGTNSNSCSSVSGSPPPAGADDEGEEGGKRGVLPRHATQVMRAWLFQHLVHPYPTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGEILRTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGEILRTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGETLHTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGQTLHTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGEILRTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGQTLHTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPGQTLHTALTLRTEEEKRSLAAQTRLTLLQVNNWFINARRRILQPMLDCQDKPAGGKKSKNGSSISKRYWTDALTNPQFTAGLLSSSEDEEAEGEPSGDEQEAQRDSPADHAYPPLQQPMH"
misc_feature 1019..1243 /gene="LOC112051150" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1574..1576,1583..1585,1712..1714,1721..1726, 1733..1735) /gene="LOC112051150" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1622..1738 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <1808..1894 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <1964..2050 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <2120..2206 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <2276..2362 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <2432..2518 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <2588..2674 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <2744..2830 /gene="LOC112051150" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" polyA_site 8049 /gene="LOC112051150" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
taattttgaagacaaagaactataaggaaacttattagacctgacttcattattaatcaaactgcattgcgactgtacagtggcagcgagttaatgcagtcgagacttagaactgaaaaaatctgaataaaataagaacaagtaggaggcgcttttacgacagatattgagtagtgggacgggcctaacatgcgcaaagacgaattaccctacattattagcacgctgcactatcattaacctatgccatgaccaacactttcatccgatgaccttaaaacataaaacggtcgttaataaaaattattaaaacaagtttacagaccgtcgtggatatgtaattacgcaaagcgttacgccgctgggcgtgacatcacaaatcagtccggtcaggctgaagacaacgcgtctaatgactatctctttttatgcctcacgttagagtaagaaaaaagatacgagcaggctggtgctgatcgtattctgtcgagggtgtcgccattttcgttttgacgaatattgacagcacggcagacagacagtggcgcggccgtcgacgcagcgtctgccagattatttttattttgattgtaaatcatataacgactgggcttgatttatttacacgtagtgtatttattagtgtttagtttcttatttacaaaacaataacttgtgacgagtgatagattaattgagcggtaacaatatatttggtgctaacctccttctttttttacttgtgttttgagaactgcaagacgtgatcgatatgtgcaagatgtattacagatgactttgcatcaaatttagcatcgtgttaattatctgatgcggtggcggtggtgaggcgctcgggatgcagggcggcggcgcgcccgccgctgacgccgatcaggcgcagttcgaggccgacaagcgcgctgtgtacaaacaccccctgttcccgttgctggcgctgctgctggagcgctgcgagcaggccacggcgggggcggaggcgccggcggccgacgcgtttggagctgacctgcaggccttcgtgcagcatcagcgccgcgaccgccgccccttcctcgtcgacgatcccgaaatcgacggcctgatgattaagagcatccaggtcctcaggatccacctgctggagctggagaaggtgcaggagctgtgccgagacttctgcggacggtacatcgcctgcttgaagaccaagatgcagagcgagaacctgctgaggacggattacagtgctggaggcgttgaaagtaacaacaacttgtctggaacaatggacgaccactccagcacatctaactcaccgcagtatcagtcccccgccgccccgctgagcgcggcgtcgttcccgcccgtgtaccccgccgtcagcgacctgcccttcgcgccgcaccgggaccagccgcctctcgtagtccaaggttcgactcccatcggtcaaatcggtgcggggctgctctccacggattctttcacgggtacaaactccaactcgtgctcgtcggtgtcgggctcccccccgcccgcgggcgctgatgacgagggcgaggagggcggcaagcggggggtgctgcctcggcacgccacgcaggtcatgcgcgcctggttgttccagcatctcgtgcacccgtaccccacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtgagatactgcgcactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtgagatactgcgcactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtgagacactgcacactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtcagacactgcacactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtgagatactgcgcactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtcagacactgcacactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccgggtcagacactgcacactgcactcactctccgcacggaggaggagaagcggtcgctggcggcgcagacgcggctcacgctgctgcaggtcaacaactggttcatcaacgcgcgccgccgcatcctgcagcccatgctcgactgtcaggacaagccggcgggaggcaagaaaagtaaaaacgggtcatccattagcaagaggtactggaccgatgcgctcaccaacccgcagttcacagctggtttgctgtcgtcgtcggaggacgaggaggcggagggcgagccttcgggcgacgagcaggaggcgcagcgcgactcgcccgccgaccacgcatacccgccgctgcagcagcccatgcactgagcactcgcaattagagcaagacatcgacacgtcacatgacaccactccaagaagaagtatgaaaaaagacaaaaactgtgtataccatagagtgtaagttagcatagaaacatgtatacgtaaacatacctcactattttaaacttacattaattatatagacgctttttattgtctattctttttgattcaatacatgagtattgtgtgaacagtgtacaattttttggaaagcatagaataaataaagtaaaaatatattatcatgtcgaaatttacagaatatttataactggcatcacttaacaatgacaattatagctataaaatttaacctctacaaaaaattttcatgttaaatgcggtatggtatgtattaaaaaaagtgtacactgtcattttgtttttaatttaaaaaaagttttggatgagcactgttatttgtggttagtatatatttataaaatatttatatttgtataacaaacacgaaagatgtttttgtatgactgcaacattatcacttattaacagaaggggtagagtccataataaagtttaaatttgaaaggaacaaaaaatgttgccatacttcttaaatatccctattttttggtgtatttttcagctttcaaattaaaaataatttcgtatcatcttcataatatgtatgcgtcgtcaatttttatgaccggttgtgaataaagtagttttgtttttcaaccttcaccgactgagcaaaatgaaatagtataagaatattttttaccacaaaaaaaaagaaaactatagacaataccgtccatagacaaattgtatttatttgtaaaaaaataagttaatatactgatattattttagtttctttttctacagccgccatactagtttaagaatagttatagcataaacatatagaatacgaagaagttatcgccgcttgtacggacctccttggagtagggaagtatgcgctgtggcctttacgcaagtggtcttgagttcgattttaggttgaggttaattctagtttccaagtcgttctaggaaaagtttcgggttgtcggtgacttacaattatattgaataatactgaccaaaaaaactttgctaacccgtcatggtggtagtcatattcctacttagcgagttattataaaaagtggcgaattcttattctacttgtttatgaattttgtgtacttttaaaaggctatacgatcaaaatatacgattcaagaaaaaaaaatgtatactcaagaaacctattcgattcaaaacctgtatacgcggaaagtaataatatcgggaaattttaaatttagatgtaaattttaaaaaatgattcgcagtattcgattaacgggaactcggtgtcgattccccttaagtgttaaatgtaagcgtatttttaaataatcgataataatgtgctatcaacagtcaaatttatgaatagcaataatgaaatgaaaataaatttaatgtatcgttttttaaaaaaatcagttattttgcaaaaacactcgtactggtattattaaactgaaaatattttaaaaattttgttaattactattaacaattatcacatgttaacactcaattatcattaataaaattaatacaaagctaggacgtcaaaatcgtaaaccacacgaaagttgctaaagatagttaaaatgtaaattatttttatctggcaacttatacacatactgtgcctgtgtgtctctatataacaaggcgtcactaaaaagtgactgaaaattaattcatagatacaccagaacattgtgtaaatatgtcgaggtgctaggtaaatttaatacatatttatatacaactctcaaataaaatattatgtcacttgacgtcttatcgcaatacgcgtgtcttataaattctatggcatatcggatggaaaacctggaattttacgcactaggtatataaaatttcacgtcaacacatgtatacgtcttaataccttacatattagaaatacaatttatccacagttgataatttaatttactacttttttttataaaaccaggcagtttatactatgtataaggtaacccctgtgagggtaggaatccccggttctgtataatgaggtacaaggagttaaaattacaaaggtgttctaaaattatgaaataaagaaaataagttaaattattgatttattttcggcattttaatgcacaaatgattgttagggaaaatcttcgtaaatgtaatggtctggaggttattatggcagtcattattgttacattaacattatgtaaaaatatctttgtgatccaataaaaataaagaaataagaactttctcatgatatcagcagcaaataacaaataagactatatagtctgttttccctagcttcgttatacaggaccggcgataccaaataaagattcaagcttcgtatcttccatgattttgtatttaagaaaaaagaactgtattaatatatagagtaagagatatttttgttaaagttttacttagattttggcctattatcgatttctgtgaaagtagcttatagattctagtgtttagggtaccgacatttttatattgatgaatgtaaacgaatggaattgaatttttaattgaaactatcgcaattaattacaaaaatgtttatactatgacattattttgaaaaaaatttaaatgttgtcattgttaaacatttcataaaatcaactactttttatgtatttctttgcactacactaaattgagatgaaaaactattcattctgttgttttttcctctcatttactaatttgtcatttctttttttttttattttgacaaataaataatgaatgaaatattattattatataatacaccaaaaataaaaaattaacaaacaagaaattaacttaaaaactaaagtaaaattggcgcccttaacgctaatgagcgatctcttccagaataaataaatgagaaaaaaaattaatgaaaaactaataataagcgttatgatactataactattattatgcattatgtataaattgtttattattatgcgtttttacatatattcgttaatttctgtcactggcacaccattaacaacttttaattttatctgtgatttttaattggatattactttttcggattttgtatattttatatttataagttttgcaatatgtgtatgttgcagtttgaatgttgtataatatgtaaatgataaataaaaatgtcggtattgtcgtctgttatacgatgaaacggatatacgtaatttttaaagtgaaatataagatttttttataataatttttaattcgtctgtatctatgactatggtagggcagaatataataatatgctacttttagtttcttaatagatagatttaattatttgaataaattgactttattaatattatatgtacctatctataatttacaaaaaaaaaaaaataacataatgtttaccaaaataattttgtttgagtcatagttttttcattagaagctaaagtagcatattttatacattacgagcccttagtgataaaatattcttaaagattaataatatctgccttattattaaaaagtaggtatatcagaattacatatttcaggaagatttaaaaaacttcagttaatccttattatttaatttagttttttaatatttctgatgcactttagttttgtatatatagcttttatttacaagcaaaagaaaacccgtactttttaactataaggtagattcatcgagaataaagaagacatatgacatgaattgcttttattattatccaaaatgataaaacagatacattatactgattgaatttattgtatacgagtacattataaaataagtaacatagcggccaagttgtgaaatcttatgctggcaacactgtagaagtactactactatcggccacgaaaccaagtaatgctgattgctagctagtccaaatctaaatggttgttgataaattaataagtaattaattattttttttatagctgaaagtaaagataatcaaaactaaacaataataaagattaaaataaataaaaaaaaaaacataaatgattaatctaaaaacaatagatatataataatattataatttttctgatttttgtttgaaatttatacttataaaaacattataaataaaaaagaaatttaatatacatagtttatttatttgtttgtttaaatttcttgtaattcatctagttagatgggcaaatcatgtcatatgtcccattaagaaatgtccagtgtagtataccatagagaataaaaaacgcttttagtataacgtttcaagttgattaattatacctattgattataattaaggcataataatttactagtcaataaaaacagtctcgctatatgattttttttttgtatttttacgaactatcttgggatctgtcaaaatttttacgcaaggttacttttaaaataattattatttttacaaaagtgattcgtaattgttttaataataataataataatttatttatttgctttaaacatgggttatacaatatggttaataaaattaaacatacatttcgatccgaacatgttttgccgttataggcgtgcaaaatatttatgaaattttccaatattgttatttattaaatgtcatgttttatttgaatgggttatataataatagatttaatatgacaattaacatatattttgatgttcttgctggttttacactattttagaagaaacattgtttaaaaattaaaacacaatgatgttgtacacaacatcggacacataatatatgtgtccgatcttgtgtatcctataaactattaccatttacattttgttaacaattttaacagatctcaacgatacaagatcatgtacagttcgctgcaaaatataatctttttcgcatgccaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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