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Previous release (v1)
2026-02-07 15:02:22, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_048917401 7353 bp mRNA linear INV 18-MAY-2023
DEFINITION PREDICTED: Ostrea edulis uncharacterized LOC125678734
(LOC125678734), transcript variant X7, mRNA.
ACCESSION XM_048917401
VERSION XM_048917401.2
DBLINK BioProject: PRJNA970818
KEYWORDS RefSeq.
SOURCE Ostrea edulis (European flat oyster)
ORGANISM Ostrea edulis
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Ostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079165) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 18, 2023 this sequence version replaced XM_048917401.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_947568905.1-RS_2023_05
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 05/10/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..7353
/organism="Ostrea edulis"
/mol_type="mRNA"
/db_xref="taxon:37623"
/chromosome="2"
gene 1..7353
/gene="LOC125678734"
/note="uncharacterized LOC125678734; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 38
long SRA reads, 1 Protein"
/db_xref="GeneID:125678734"
CDS 297..3806
/gene="LOC125678734"
/codon_start=1
/product="uncharacterized protein LOC125678734 isoform X3"
/protein_id="XP_048773358.2"
/db_xref="GeneID:125678734"
/translation="
MEADDDSLRDLVERAKKRPKYVRMVSWEFENETKKPSRQNKRQQKSDQGLEVQEAECEEEEEEEESTSNEECDSESTYYSAEETIHTEEALGEEFSSVSLQDSAAHPYQVQSRYRAPSKKQKRKRRYRMIYCDQTLPFMKEGFGIEEDIQDVVAEIQGKQIHVLREVPSLSILCIKMLRGIRFPVAAMPHLIKSRIYGANVDLQFKKFQYGWLLNFLAFLDKGKVDLNLKSYKDLHRLLMCSIWHPLPYLKQSPQLIERYNKSKITASLMYTSGLVLNLSQEFRSWSLTIYLRIPWLLSALATVVECMLPSQISQRKQWGKNSYQNEGEQLKTATILAVKRVKLALSKRLPDIVDEFLKVALPYAFWARGDIQHATELFCQLSQSENRCRYKALYLNEAGRMHAISGEKSSAAKFYRLAGEAAVTKPKHNKHFREIDGQVLMLLASLNDQGILRDESRSSWNGWRTVYTSDCLESQGAVVHAVEHWLCFHAGSWKGDYLEESLNRLLPLCTQHPEILYHMSLVHALKGDAQSSHDCYCNFRDRVFGSHLPGEGFVQRRSDNLWLPLVQIVKQQGQITCIPVTWRTQLRSLCVQTKPRVTQEADVVSEQLNLRMTPQGFLTGDMQLLLPPTGGIYLDPYTGMITYSNNATEPWRGIMNDPWRLVLPTPLEVYHDEDGVRVQLLMTAQQTVLLDDSGSCTAAHDSPLNDICHLIWSGPDGRKVKVNLTVKFTDLIYKTVEEELNSITFSSEMQRQEALNRLQILYRKGFGMQAKDIESYVHRKYNQKTTDKKKKKREKTYGIKLAFKLRAAPFMFGRAVAMIFDNCIPTITSKFLVIANCSTADLFCKMKIYNINNWNLDLTYHKVQDAIPSLIRPCQNYHGYRVNNADVIHFHFQSPKMRIHVFDQEGSIVDTIPLGSSEKTDVLLKNSIYIGQIYPLIVKDQIIAINEQKRLWCRTGGEDFLSSDIENATSMAAFGDILVVLMEDKVQFVAAHQLRVLGIRLTDNSLRGSSLRIDEKRMAIEQKFDTVQVLATQTFTRDNISYLLCIAALDRTVVCLEVPTDLSKCSEVTVFLTFTLAGYPVEGYIINQASGFLLTFTQHNSLSEAYVEHLCHYSFDGKLLGILPCLGPGPRSFCHAHLPGDPESGGRGLYLYMRDGHNGILGIQLGDH"
polyA_site 7353
/gene="LOC125678734"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
gaaaggaagttgcaaaggtatcggtatcaatgaattaatgtgattgaattggacaacttcgataaatgaagcactaggctatatagggagaaaacaggggcggatctaggaattgcggttacgggggatgtcactaaccaggaggcacagtatgtcaaatggattttcaagcatcctcaagtactgtagattcaagtttgtatcatgatccttgtaggaccattattgggactgagtgttgacaaacaactgtggactgtgtggcacatggagctcttgtttaatgaatttttgaaatggaggcagatgacgattccttgcgagatctggttgaacgtgccaaaaagaggccgaaatatgtccgcatggtgtcgtgggagtttgaaaacgaaaccaaaaaacccagccgacaaaataagagacaacagaaatctgaccaaggcctagaggtgcaagaagctgaatgtgaggaagaggaggaggaagaggagtccacctcaaatgaggagtgtgattctgagagtacatattattcagctgaggagaccattcacacagaagaagctttaggggaggagttcagtagtgttagtttacaggacagtgcagcccacccttatcaggttcaaagtcgctacagggctccaagtaaaaaacagaaacggaaaaggcgatataggatgatttactgtgatcaaactctgccatttatgaaagaaggttttggcatcgaagaagacatccaagatgttgtagctgaaattcaggggaagcaaatccatgtgttgagagaagtccccagtctctcgattctgtgcattaaaatgctgagaggaatacgctttccagtggctgccatgccacacttaatcaagtcgcgtatctatggtgctaatgtagatttacaatttaaaaaatttcagtatggatggttgctaaattttctggcttttttagataaggggaaagttgatttgaatttgaaaagctacaaagacctgcacagactcctgatgtgtagtatttggcatcctctgccgtatttaaagcagtccccacagcttatagagaggtacaacaagagcaaaatcacagcctctctgatgtatacaagtggactagtgctaaatttgagtcaggagtttaggtcctggagtttgaccatatatctgcgcattccatggctcctatctgctttggctactgtggtggaatgtatgttaccatcacaaatatctcagaggaagcaatggggaaagaattcctatcagaatgaaggggaacaactcaaaacagccaccattttagctgtcaaaagagtgaaactggccctgtccaaaagacttcctgatattgttgatgaatttttgaaagtggccctaccctatgcattttgggcacgtggagatatccagcatgcaacagaattgttctgtcagctttctcagtcagaaaacagatgtcgttataaagccttgtatttgaacgaagctggaagaatgcatgccatatcaggggagaaaagtagtgctgccaaattttatcgactagctggagaggctgctgtaactaaaccaaaacacaacaaacatttccgtgaaattgatggacaggtcttgatgcttttggcctctctaaatgaccagggtatattgagagatgagtctcgctcgtcctggaatggttggagaactgtgtacacatcagactgcctggaatctcaaggtgctgttgtacacgctgtggaacactggctctgttttcatgctggatcatggaaaggtgactatctggaggaatcactgaataggctccttcctttgtgtacacaacaccccgagattctgtaccacatgtctttagttcacgccctcaaaggggatgctcaaagttcacatgactgttactgcaacttcagagatcgtgtgtttggttctcacctgcccggggagggatttgttcaaagacgttcagacaatctgtggctccctctggtgcaaatagtcaaacagcaagggcagataacctgtatacctgtcacctggagaactcagcttagatcactgtgtgttcagacaaaacctagagtaactcaagaagctgatgtagtatcagaacagctgaatttaaggatgactccacagggatttttaacaggagatatgcagttactgctgccacctactggtgggatctatctagatccttatacaggaatgatcacttacagtaacaatgcaacagagccatggagaggaataatgaatgatccctggagactagttttacccactcctctggaggtctatcatgatgaggatggagttcgagttcagttgttaatgacggcacagcagactgtacttcttgatgactctggctcatgtactgctgcacacgattctccactgaacgatatctgccacttgatctggtctggacccgatggcaggaaggtcaaagtcaacctcactgtaaaattcacagacttgatttacaagactgtggaagaggagctgaattcaattaccttctcctctgaaatgcaacgtcaggaagccctgaacagacttcagatattgtatagaaagggttttgggatgcaagcaaaggatatagaatcttatgtgcatcggaaatataatcagaaaacaacagacaagaagaaaaagaagagagagaaaacatacggcattaagcttgcttttaagcttagagctgcaccattcatgtttgggagggctgtggcaatgatatttgataattgtattccaaccataacgtcaaaatttcttgtgatcgccaactgttctacagcagacttattctgtaagatgaaaatttacaacataaacaattggaatttggacttgacctaccacaaagttcaagatgcgattccttctctcatccgcccctgtcagaattaccatggatacagagtcaacaacgcagacgtcattcattttcatttccaaagtccaaaaatgagaattcatgtatttgatcaagagggttccatagtagacaccataccattaggttcttcagagaagacagatgttcttctaaagaacagtatatatattggacagatttatcctctgatagtgaaagaccagatcattgccatcaatgaacagaaaaggttgtggtgccgcacaggtggggaagatttcctcagttctgatatagagaatgccacatccatggctgcctttggggatatactggtggttttaatggaagataaggtgcagtttgtagcagctcaccagctccgagtgctcggcattcgtctcacagacaacagtctgagggggtcgagtctgaggatagatgaaaagagaatggctatagaacagaagtttgacactgtgcaggtgttggcaacgcagacctttactagggacaacatttcttacctattgtgtattgcagcactggacagaactgtagtttgtctggaagtgcccacagatctatcaaaatgttcggaggtgactgtgtttttgaccttcaccttggcagggtatccagtggaaggctacattatcaatcaagcaagcggatttctcctgaccttcactcaacataactcgctgtccgaggcgtatgttgaacacctgtgtcactacagctttgatggaaagttattggggattctgccctgtctgggccctgggccaaggtctttctgtcatgcccacctcccaggtgacccggagagtgggggtagaggactgtacctgtacatgagggatggtcataatggaatcctaggaattcaactcggtgaccattagctataacaagactctttagaatggaattctacaaaatactctactgctttcatatttgtgatatttgcaacaatttgtttcttttctatccaagtatgacagtgatatgtaattctgcatttatacagggttttttatcattttatgttaacagatagtgtaattgtttgtttctttcaagcataattgtgtcattgtgcagtcttttcctttaacatacatttagcttgattcgttttacaaataagttggtcttgtaaattaggctattagttaagcaattagtaaattagataattaagttacatgtcagatctggtcagtttccaacactgatgcagagaagagggttcaagttataattttgatgtttttttgggggtgaatccacatattgaacaaaaccgcatgttttatatattgaacgaaatgatggtgtgcactttttatagaagaaatattttgtggataacaataaataaccaattcactcatcaaaacgttttaatgctggcacactgccagacgttgatacgttttaatgctggcacactgccagacattgatctgaattacaattttaaaaatggtatgtgtaacattatgaacattatgcaattacagtggcgtagcttccattgaggcaaccgaggcagctgcctcggtaaaaaaaaacaccttttacgttgttaaaatgtcgataccccagaccccctgcctcggtaatattcgaacccaagctacacctatgaattattgatatttttagctcagtaggatggagtagtacaatattcacgaaacatggaaaatattgcacacttctcaggtggctatagtgttgtattgacctaagaaatgtcaataactgttctattatataattgaataattcaaaacatcgaaactggttactaggccctaagaaatgatgcctggttgaccatctttgtatacaaatacagtgcaatacctagagtcaaaattgccttgagatgcaagtttttgtttattagctcttctgagctgtaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaacctcttggccaatttttttcaaatttcttacagggtatcattggcccaagggctttcatacatactaaatagagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttatatttccttaaatctttgatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaaagtaggtcacattgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcgctgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacttacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaactttgacagttgatgcatcttgagtctacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatattttcagatactatttgacctacagtcatcaaactttgtcagttgttgggtcttgcatgttcgtagggtttcgaccaaaaagtaggtcaccttgacctacttttggaattggatggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatattaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctacgcccttgggcctcttgttttaagactgaatcatttaaaacactgaaaccatctactagaacatttcagtgacatttatgttacatatatgacatcattacatgcttcctggtgttaaacaacattcagtttgatttgaatacattgcattggatactaataaatgcatcagacgaccttcccatcatttacgagcatgttttgcattttggttataagttgtttcagaaacgaagtgtccatctgatttcttttcaaaatgcacaacatactcgtcacttatgttgtttattaaactaaatataaactctttttttgtcagtgctcagaaattttggaaatattttaactttatgtcaaaccagagatgtatatattaaatatgtcatagaagtctctggtcaaacgatacaaatgtacacaattcctaagtggaactttttttttttactttgataattcctattgattaacactgaaaagttcagaaacgctatataatgtagttgtatttattttgtttcatggcttagaagaccttgtcattgatgtgatgtgtgaaagttggaatttttgaaaattataccgaccttgtgccgttttgtaatcttatttttgacagtcactgtgatatattatacactggtttttcattttatttaaccattatacattatggtatttgtcttgtaatggaggatgaaatgaaatttaaacatgacaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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