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Previous release (v1)
2025-10-24 13:35:57, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_048891361 4451 bp mRNA linear INV 18-MAY-2023
DEFINITION PREDICTED: Ostrea edulis metallo-beta-lactamase domain-containing
protein 1-like (LOC125659624), transcript variant X3, mRNA.
ACCESSION XM_048891361
VERSION XM_048891361.2
DBLINK BioProject: PRJNA970818
KEYWORDS RefSeq.
SOURCE Ostrea edulis (European flat oyster)
ORGANISM Ostrea edulis
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Ostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079172) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 18, 2023 this sequence version replaced XM_048891361.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_947568905.1-RS_2023_05
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 05/10/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4451
/organism="Ostrea edulis"
/mol_type="mRNA"
/db_xref="taxon:37623"
/chromosome="9"
gene 1..4451
/gene="LOC125659624"
/note="metallo-beta-lactamase domain-containing protein
1-like; Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 86 long SRA reads, 5 Proteins"
/db_xref="GeneID:125659624"
CDS 122..820
/gene="LOC125659624"
/codon_start=1
/product="metallo-beta-lactamase domain-containing protein
1-like"
/protein_id="XP_048747318.1"
/db_xref="GeneID:125659624"
/translation="
MPYEVIVLKEGYSKAEGPGQQRACGSISLIKGPKNIIVDTGNPWDRDNILNGLKQNGLSPENIQYCVCTHGHSDHVGNLNLFCNAVHILSYDICIGDQYQMHDFKMGIPYEIDDDVEVVPTPGHTGTDISVIVSNTDLGTVAVTGDLFECLEDLEEPSLWQDNSENPEIQEQQRIEVLRKADYIVPGHGKMFKVPDEYKRSSMKVVMFREEVYEVGGQKTTLCEYVEIEDSQ"
misc_feature 131..700
/gene="LOC125659624"
/note="uncharacterized human metallo-beta-lactamase
domain-containing protein 1 and related proteins; MBL-fold
metallo hydrolase domain; Region: MBLAC1-like_MBL-fold;
cd07711"
/db_xref="CDD:293797"
misc_feature order(329..331,335..337,341..346,491..496,557..559,
683..685)
/gene="LOC125659624"
/note="active site"
/db_xref="CDD:293797"
polyA_site 4451
/gene="LOC125659624"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
ctaaaacccgtcaccccttatacccatacttatcagttagaataaacgaatacaatagacccgaatttaaatgatatataatacgaattgcaacccctttgagccttagcgtgacaacaccatgccctatgaagtaattgttttaaaagaaggctacagtaaagcagaaggcccaggtcaacaaagggcatgtggaagcattagtttgattaaagggcctaaaaacatcattgttgacactggaaacccttgggacagagacaacattctgaatggtcttaaacagaatggactttctccagaaaatatacaatattgtgtgtgtactcatggccattccgatcatgttggaaacctgaacctcttctgtaatgctgttcacattctgtcctatgatatatgtattggggatcaataccaaatgcacgatttcaaaatgggaattccttatgagatagatgatgatgtggaggtggttcccacccccggacacacaggtacggacatctccgttattgtcagcaacacggatctaggaactgtggcagtaacaggtgatttatttgaatgcttggaggacctcgaagagcccagtctttggcaggacaacagtgaaaatcctgaaattcaagaacagcaaaggatagaggttctacgcaaagctgactacatcgttcctggacatgggaaaatgttcaaggttcctgatgagtacaaaagatcgtccatgaaggtagtgatgtttcgtgaagaagtttacgaagttgggggccaaaaaaccactctctgtgaatatgtggagatcgaagacagccagtaattggacatttgatatggaagttaagatttctacatcctctgttgtttattacacattcctttatacaatagtactattatttagaatgtgatagtttcatcaatttttgtgggtatcaaattttgcagatttgtcaacaatatcatggaaagctaccctatgctttctttttgagcaaaagttgtacatgtgctttcaattgatgatctcttgatttcctgatctggtacatctatagatagattaccataggattataatattcctcttttacttatattccaatatttcaattgtgttatattacatccttaaacttacatttgtctgaatgtgtacacttgtctgaatgtgtacacatgtctgaatgtgtacacttgtctgaatgtacacatgtctgaatgtgtaattaaggaggtatgttacaccagagaaatttgatatggattaaaagtgcaggatatgtacatgtatatacaacaatattttgaaattgaaaactttcaaatttacagttcagcagtcaacatgctaacctactgagctattcagcttaggcaatgaatttagaaatgaattgacaaatattgctaatatttatattttcatccatgttttaaagggacatggacacaatttaagctgaaaattttaaaatttttatttttccatttttaatgtttagaatgcttaactaaggtacagtatttctaatggtcagcaaaaatttgaacgtcagttgtcgaggtacatgggagatacagagctcaaaattctgttatgcatgtaaacaaggctcgtgccatgtttttgtttacatagatgtaggttaaatatactagtaaaagtttcgtttaaagcaaattttttcaatttacaagtttattctgaacagaattgaatagtttctagtgtttggcatgcacttctcattttgttttaaacatgctattttctattaagcaatctatatgtaaacaaacacatggcacgagccttgtttacataacaaagaattgtgagtgctgtatctcacttataattcaacaactgcatgagtggcatagctaggtttgaaatatttgtaagcagggggtctggggggctgccgccccccaagaagccgaggacaattttcgtaatatgtaacaaaaatttaacgaaaatatttgtaagcacgtgcatccagtgctacagtgtagctacgccactgaactgatatattcaaattttgtttgaacattagattttttaaagaaaaaagatattctgaattattaaaacttttttgcattggaatttatagatcagctgtgttaattaaattggctatgtcccttataatgtgtactattcaaagacgaaaataatacaatggtttaattcaaaagtttcttgatccacatgcctgcatgaaattgtccaatgtctgcataaaaggaatgttgtctttattttttaaccattgcacgagtaacaaatttgattcattaggtgttttatagatacaactcttctttattacatatttaaatgcagagtttgaaaccaatgtgttgttgttatgagattcctcattttttagctcttctgagccaaaggctcaaagagcctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaattttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaatagagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaattaaaaaaatttttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgatagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgtgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaatactgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaagtaggtcacagtgacctattttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttatggtatttgacagctaaattactatatttcagacactatttgaactacaatcatcaaactttgtcagttgatgtatcttgagtctacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttgaaatttgacggctatatttatatatttcagatactatttgatctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaacttgacctgcttttggaattggacacctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgtccaaagggtgttgaccaaaaagtaggtcaccctgacctacttttggaattggacggctatatttatataattcagatactatttgacctacagtcatcaaactttgtcagttgttgggtcttacatgtttgaagggtgttgatgaaaaagtaggtcaccttgacctactttttgaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaagatcattaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgttctgtatcacatgcacattttatgttgtatttcctggtatcactagttttttcttgctacacataccgggtgatgattggatgtgtttttgacttttgaaaatttaaccttctaattttgcacttttgttgcatgtcaaccaaggtgaaccatttttaacactgtgtatgtacattgtacaatgtatgtgtaataaatacaaactcagtaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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