LOCUS       XM_048889708            6236 bp    mRNA    linear   INV 18-MAY-2023
DEFINITION  PREDICTED: Ostrea edulis RING finger protein 145-like
            (LOC125658441), transcript variant X1, mRNA.
ACCESSION   XM_048889708
VERSION     XM_048889708.2
DBLINK      BioProject: PRJNA970818
KEYWORDS    RefSeq.
SOURCE      Ostrea edulis
  ORGANISM  Ostrea edulis
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
            Ostrea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_079172) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 18, 2023 this sequence version replaced XM_048889708.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_947568905.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/10/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6236
                     /organism="Ostrea edulis"
                     /mol_type="mRNA"
                     /db_xref="taxon:37623"
                     /chromosome="9"
     gene            1..6236
                     /gene="LOC125658441"
                     /note="RING finger protein 145-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 124
                     long SRA reads, 2 Proteins"
                     /db_xref="GeneID:125658441"
     CDS             71..1945
                     /gene="LOC125658441"
                     /codon_start=1
                     /product="RING finger protein 145-like"
                     /protein_id="XP_048745665.2"
                     /db_xref="GeneID:125658441"
                     /translation="

MQPLKLKREYLLASVCVILRVPSLFIMEMWFRTDPQRATDAHSVDPGQAELITTVVYYSILVFAVAVLLMPLRKLVALYMYIVSLVLLLMAHHMSQIYVEMEAEESETYILSDYPALKRLGVHLTAQCVLAAFIAYLIDISSWRRFILLIYTLPMIARIAGVPLAAFEHIHHFCTLFTVILIMLFLFNNVGFVLDVMKENLIRWKALADAIGWISLLFTAWHTILLPVQFLVFWLILFGCQLYVYMIKTPASLSQEGWLLFILACVGECCATPISLIALCITIAYASYYILTLTKLYLQGWNAFTVDHDVMRGWTEGFTMMLIAVQTGLLDLKPIQRAFLMCVLLFIVASSLIQSIYEMADPILLSLSASHNKNVFKHVRAVTLFTFLWLFPLYMTYSICQYFDLDFWLLVIMSSCLLTSVQVVGSLVIYTLFMFDGIRTESWESLDDTVYYTRSIVRILEFIVAVFVVCYGMKESIFGEWSWINSSILIIHCYFNVWQRLQSGWRTFLMRREAVKKLASLPSATDQQLQDYNDVCPICYQSLSSAKITPCGHFFHATCLKKWLYVKDTCPMCHKKLHETSEESQNSPDDRPAQDEDVPSENENSDAESDMSNQAESSDDSSDG"

     misc_feature    104..1585
                     /gene="LOC125658441"
                     /note="TRC8 N-terminal domain; Region: TRC8_N; pfam13705"
                     /db_xref="CDD:433417"
     misc_feature    <1547..>1927
                     /gene="LOC125658441"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: HRD1; COG5243"
                     /db_xref="CDD:227568"
     misc_feature    1670..1792
                     /gene="LOC125658441"
                     /note="RING finger, H2 subclass, found in RING finger
                     proteins RNF139, RNF145, and similar proteins; Region:
                     RING-H2_RNF139-like; cd16476"
                     /db_xref="CDD:438139"
     polyA_site      6236
                     /gene="LOC125658441"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggttaaagagaaagttaaattaggctcagtcggtgacgttacacgaaaaaattacacatcgacaggaaggatgcagccattgaagttgaagagagaataccttttggcttctgtctgtgtgattctgcgggtgccgtctctatttattatggaaatgtggtttaggacggatcctcagagagctacagatgcacattctgttgacccggggcaagccgaactaattacaacagtagtatattactccattttggtctttgctgtggctgttctgttgatgccactgaggaagctagtagccctgtatatgtatattgtcagcctagttctgctgctaatggctcatcacatgtcacagatttatgtggaaatggaggctgaagaatcagagacgtacatcctaagtgattaccctgccctcaagcgattaggcgttcacctgactgcacagtgcgtgctggcagcgttcattgcgtatctaatagacatcagcagctggagacgattcatcctccttatctatacgcttccaatgattgcacggatagcaggagtaccactggctgcattcgaacacatacaccatttttgtacgttgtttacagtgatcttaatcatgttatttttattcaacaatgttggcttcgtgttggatgtcatgaaggaaaacttgattcgctggaaggccttggcggacgccattggctggatctcgctcctcttcacggcttggcacaccatcctcctaccagtacaatttctcgtcttctggttgattctgtttggttgccagctctatgtgtacatgataaagacccctgcaagtctgtcacaggaaggctggctactttttatactggcgtgtgtgggtgaatgctgtgccacgcccatcagtcttattgccctgtgtattacaatagcctatgcatcatactatatcctgactcttaccaaactctatctccagggatggaacgcattcacagtagaccatgacgtgatgcgggggtggacggaaggtttcactatgatgctgatagccgtgcagactggtctcctggaccttaaacctattcagagagcattccttatgtgtgtgctgctcttcatagtggcatcatcactcattcagtccatatatgaaatggccgaccccattctgctttctctcagtgcttcgcacaacaagaatgtcttcaaacatgtccgtgcagtcactctgtttacattcctctggctgtttccactctacatgacatactccatatgccaatattttgaccttgacttttggcttctggtcattatgtccagctgcctcttaacatctgtgcaggttgtggggtcgttagtgatatacactttatttatgttcgatggaatccggaccgagtcgtgggaatcattggacgatacggtgtattatacgcgatcgatagtgagaattctggagttcattgtggccgtgtttgtcgtgtgttacggaatgaaggaatccatctttggtgaatggagttggattaattcatcaattttgattattcactgttatttcaatgtgtggcagagacttcagagtggatggagaaccttcctcatgagaagggaagccgtcaaaaaactggcatcgttgccgtcggcaacagaccaacaactacaggattacaatgacgtctgccccatttgttatcagtctctcagctccgccaaaattactccatgtggacatttctttcatgccacttgccttaagaaatggctgtatgtcaaagacacatgccccatgtgccacaaaaaactgcatgaaacttccgaggaatcccagaattcacctgatgataggcctgcccaagatgaggacgttccatcagaaaatgaaaactccgatgctgagtcggacatgtcgaatcaggcagagtcctcagacgacagctcagatggatgatcattcaacaggtaccacagactccacccctgtgtttagataaacaaaactgtttgtttccagatgtgttgaagcaagataaaactggaatggcaggaattctatcatttttatactcctgtccttagacgggatgtattatggtatggcaatcgtgtccatctgtccgtctgtctgtcctgcttcatgtccggctcgtaactcaaatactatgagaccttgaattattgaactttgtcagctgatatatcttgggtagaaggtgggtcgcgctttaaagttcagtcactgtgacctttcattaagatgatatggccaaatatgacaaaatcctgcccaactcgttaactggacaattatttgatctagaataattaaacttggacagttaatgtgtcttatgaagaagggtgtgtcacaccttacatcagagtcacagtgacctataattaagatgatatggccatatatggtacatgtataaccctttttttgggctcatgtagatatgagtcctttaatcaatgaaatttttcaatttgtgcatctgtatagaaacgtaaattatatcttaaaatcaggtcagtaaaatttttaacacggaaagaattaaaataaaacgacaacaaaaccccccaatttttaaaaatcccaacatatgttggagagtaaaggttcaactcagttcaatgatcattaaatcaggagatactcatttttaaaaaaataaataaaatatagctacataatcctgataacaatatgaatacttattttatttctaacattaatgatatagatatgtgcagtattgaaatgcaaaaacaagcacatcacagaacagatagaggaattgtctgatgggaatgataattgatgtgtaatctatctaattttaatttaaaagacttcactagcctgttggaagtaagccatggtgtttcagagttcagctggagattcaatgaccattttgataagagctaaattacatttgtccagttcaaggttaatatattaatgagtataatcattgtacaacccaacataagtaattaataccatgtggaaaaaaattatctaaatattagggggtgaaacgatacagtaccttttcgattcgattttcgatactttagtctcgattcgatgattttcgattcgatacaatagcatgtaccaaattctttataatgctaagattttttatgtttcgttgtatttattgctctctgcaaataaattctacataatgtaaaaccgtttaacatagagcaacactcttatcacttgtcctaaagccgaaatgtcaccatacccaggatttatacattgggagtgcatttttcaactcgactgcatccattttgatacggcaaagtttactcgtatgttaattaggcaattttcaattccattggctaatcagaaaccgtgttatcaagagcaatgtgtgctatgattttagaaccgtattgaaccgaaacagaccccgaataaatcgaacatcgaatcgagaacaccacattgcgagtcggtcgcatcgcaatgcatcgtttcacccctactaaatatatgtaatgatttgaatatttctagtagttaatcgaacaattccagagatatactaaggaataatcttgattttagcctggacccaaaagcaaagatattggtggaagctttgatccaattaaggttgacgtgattttgtgtcgtgcacttttatctgtttacaatgaaaaataaaaacatctgatgggcgtatcatgtgccgtgcagtgcactttattcatgatgtgcatttcaattctagattgtgaaaatggtattatttgatcacattatttgtatacatggacacgttttaaagatggtattgaactaatccatgtcacatgatatgtgccaattctgaaacttcaacatgcagtgtttttgcatatgaggtctgagtgattactcctatccttatctgtgtgctgtcatcagacaaaggaatatttcatgcatccacaaatgtttctgttgatatggtcagttttactgaagagccaggtacaatgctttcagtaaaaacctcaagtgaaaaattccatcaggtactgtgtatcatggtagacatgtaatatgtgcaatgattcaaaattttccacatttttcaattcagctcatacagagaaatcatgtatttacattttggaaaaattgagaattttactaatttaaaattgggaagttcagagttctgcttccaggaatgaactgtttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttctttcaaatttggtacagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaatttaaattttttttaaattccttaaatcttagatattttagccattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcatcttcgtcttcggtttgtgtcgaccaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacctacaatcatcaaactttgacagttgatgcatcttgagtcaacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatattcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaacttgacctacttttggaattggacacctatatttatatatttcggatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatataattcagatactatttgacctacagtcatcaaacgttgtcagttgttgggtcttgcatgtttgaagggtgttgacgaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgatgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatattaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgtttaattgttgcttgtcaacgtaaacagagcagacctaacgctggcctttattagaggtcggtttgcgacactagcaggaacattgtctggcgtctgttgtaaacgtcattacagtacgttgtgcttctagtcatgtacaattttatttccagggtttgtgaataaattaaattttcgtcaatgacaa

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