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Previous release (v1)
2025-12-17 16:53:05, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_048880160 6829 bp mRNA linear INV 18-MAY-2023
DEFINITION PREDICTED: Ostrea edulis carboxypeptidase A4-like (LOC125651525),
transcript variant X2, mRNA.
ACCESSION XM_048880160
VERSION XM_048880160.2
DBLINK BioProject: PRJNA970818
KEYWORDS RefSeq.
SOURCE Ostrea edulis (European flat oyster)
ORGANISM Ostrea edulis
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae;
Ostrea.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_079168) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 18, 2023 this sequence version replaced XM_048880160.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_947568905.1-RS_2023_05
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Gnomon; cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 05/10/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6829
/organism="Ostrea edulis"
/mol_type="mRNA"
/db_xref="taxon:37623"
/chromosome="5"
gene 1..6829
/gene="LOC125651525"
/note="carboxypeptidase A4-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 47
long SRA reads, 2 Proteins"
/db_xref="GeneID:125651525"
CDS 216..1052
/gene="LOC125651525"
/codon_start=1
/product="carboxypeptidase A5-like isoform X2"
/protein_id="XP_048736117.2"
/db_xref="GeneID:125651525"
/translation="
MVLWNGNAVSTTQDKDGRHFVEQTQNYCWRGTSTGVDLDRNFGWEFGGKGSSSDPNDEEYRGEEAFSEPESKVFQDISADIAFDAFFSFHSGINHIYIPYSDTKSLQLKREPDNVQEMLSLASRLSRCSRYNYRYGTSHHLINYTADGTIFDYMAGIKKIPFSFTIELWGKQHHRPSCFDLFNPENRKLKEVVKSLHPLYINIIMYLSEWKSRNHQDLTNPNAEHPSLVLGYMLLGITIAVSLMVCLHRKWRNCPQLYHHHRIVSLKTLSSSFSAKNL"
misc_feature <261..767
/gene="LOC125651525"
/note="M14 family of metallocarboxypeptidases and related
proteins; Region: Peptidase_M14_like; cl11393"
/db_xref="CDD:472171"
polyA_site 6829
/gene="LOC125651525"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
caaacccggaacagaccacgattaacgttagcattcgatccaggttccttcagataatattcacaccagcttatggtaaacatgtcagatctgacaatcgacgcgatgacataactgcgataacaatcacacagtgccacttcattctgacattgtatttgcaagaaaatcttcgtttctcagtgaatattaaatatggccatgattgtgtaggaatggtattatggaatggcaacgctgtatccacgacccaggataaagatggacgacattttgtggaacaaactcagaattactgctggcgaggtaccagtacaggagtggaccttgaccgaaactttgggtgggagtttggtggcaaaggaagttcaagtgaccctaatgatgaagaataccgaggagaggaagcattctcagagccagagagtaaagtattccaggacatttctgcagacatcgcatttgatgctttcttttcttttcactcaggaatcaatcatatttacattccatattcagatacaaaatcgctgcagctaaaaagagaacctgacaatgtccaggagatgctaagtttggcctcacgtttgtcccgctgcagtcggtacaattaccgatacgggacctcccatcacctcatcaattatactgcagatggaacaatatttgactacatggcaggaatcaaaaagatacccttctcctttactattgagctgtggggaaaacagcaccaccgccccagctgttttgacttgtttaatccagaaaatagaaaactcaaggaggttgttaaatccctacatccactttacatcaacattattatgtacctctcagaatggaaatccagaaatcaccaggatttgaccaatcctaacgcagaacatccgtctctagtactgggctacatgttgttagggatcaccattgctgtctccttaatggtgtgccttcacaggaaatggagaaactgtccacagctttaccatcatcatagaatagtttccctgaaaaccctgagttcatcattctctgcaaagaatttgtgattttatgatgtaatgttattcagttttcactgtttttcagggaggtaactcttccatatccacaaatccctacaataacaagaaccctcacattgtgtttaaggaggtactctacatcttcataatggctgactttcttttaaaacatggatgaaaatatttatatcagcaacatttgtctattcatttaaaaaaaacattgcccagctgagtagctcagtaggttagcacatcgactactgaactgtagatcgcaggttccagtccagcaggggttttaaatttttttcagattgctttactactaaaactgcattttttgactagatagagttaatttgaaagttttcaatttcaaaatattgttgcacaaatcctccacatttatgtaaattttatggtttttatctgactacgatgatgagtcttgataagtcactattcgctattcagtatcttggctgtttaagggttgtcactcctcaaacttttgatacagttcggacatgccttctagaaaataaacacaatattttgaatagtatagctacattcagtgaccataacttaacttaataccatttcaaaccaaaaaactggaatacaatgctatgtttcatagcagaaggttgttttaaaagaaaaacctcaaagtctgctttaaacatgaaaattgcttttatttttaaactgatagcacacaatcaagcgagtcactgtcgtcatattagtgacacagtattatatttgattgaagtattgatttatactagcaaatatcattagtcccctactggcagagacaaaggggactgttagtttgcactctgtccgtccaaccgtctgtcacaacttagttttcgggatctctattcattatgctttgatttaggaagctgaaatttgacatgtggtttactactgtatgtttacagatcagcttagggttcttcaccattgagtgatttttacaagatttatgggactttgtgccaagtaagtgtttttctgactcctccactatgctttaacttaggaatttgaaatttgatatgtggttatcaaatgagtagatacatattaggttttatttccgttacagctgaattaattaataattattctaacaaaaattgtaaaatttagtctcatggttggctgaattaattcttgcactctgcctagttctctgtattttttcatgaagacatttataatccacttaatctgattcgccgcttccttatgacaagaggtcaaaattacgatgtttttctggtattaaaatatcatatctgatccaaaaatatccaaatatagattttttaatttttgtttaaacacatgagatctagacatcatgtgccaacagcaatgcaggtagaaagttgtgaattttgaagatgctaggtagaaatcaaaatgctgatctttatatgcttcattgtacagcgtacaatgtactggaagatgacccagtgtggttgttcctaacaatagaactcgaggattatgatatgaatgaagagttgtttatacatgtacgatgatagagacatctttgtttgccgatgattcctgacatgttttgattatgaaaatcaaaggaagtgcaaaaggtgatacaattgaaatttcaaggggaccgcacacagaatattatgcaaataacttgacttgggacatgtgttgctatgaaatcaatctgattaaaatacaggtctctcaaatagcactgtgcactatttatatgaattgtatcagattgtatgaaatacttatagaatacttgttttaaaataatttcagtttatatttaaacattaaatttcagcacaaaataaacaattctatccaaaaataacatctttgataccagtttaaaatgtaggctatttcaaaactaaaaattgcattttggaaaaaaaatgttattctttaaaattagtgcaaacaggtcaaaagactataagatattgataaattttcagaattgaatgtacatactgggcagagaagagctacatgtacctaattttcatgcagttcgttaattagcattacttattttacattacttttatgaagactgttaaaatttaagtgcaaaaaaggtgaaaataaatcaatatctcaacctcactagtaagcacactgtcttcccatttttagtttgtatttactgtattgatgtcagaaatatactttgcacaagaattacaatgaggagtgacctcccctttaaccggcccaagtctcatacacaagaacagcacataacaggttttttttttaaacaaaagtgtttgagaaacaatattctgtactgatgtatatcaatttacaattggactacatatacaattgtatatatatttattacatggaagtcaagacatacaaaaacatgatgattatacacataaagtgacaatttcctgtgaaaggacccaaatacattgttaccatgattacttccttttttgaatgttttgtatagaccggtatactcactgggtttttttttcttctctcgttttttatatacaagtatacacttttgcaacatttttaatgtaatatttacatgtactaaaatacaaggatcatttcttattattgaagtcttgaaacatttctcaaaacaaaaaaaaaacaaaaaaaacctcactttctctgccatatcaagtatttgacactttcaacaaagtaaaaatatatctagtgtgtgttgaaaagatacttgactgtaggaaagtctcttggatttccatgcatgagtgggtagaaaacttctgacaggaattgattagggttggtatgtttgttaaagggaaaatatctcagtcacactccattgatacccatggggagactttctgtgagctggctataccttcgtctatagatttccgaagattgcttgatagttcgaccagtaactagtgacacaaattgaatctgtgaacaagaatgtgttagtgaacaaagtagatttacagttatttatttgaacatttatttattgcatagcttttgccaagctatctgagacattttaaaatatgtacattgtgattggtccatagtgatattgtccaataatacatgtattcattattattggttaatgttatacaatatatacatgtattctttatcattagtctatattatacaaaatatacacatatttatatccttggtccataatgtatccttttcaggttaacttaatttaccatgactttgatacatgttatattgaatgcatatatttatagtagaattttgaatcattcatagactaattctctcgaggttgcacctcatgatactgctataaaataatatatgtattgttaaagttacagtccctccttgatatatacttctttattatatacccatcaatgtttcgtttttcgatactgtggatttcacggtttcccggatcaccacacagtggttttctgattccgtatcagtatcctctgaaactgatgatgtcacaatgactcacaatgcatcaacgcaatgtcatttgtggaaaatgttgaccgtatcacaaacaaaactgcgtgcacaaaatataatttcatggtagtctgtgtttttagctcttctgagccaaaggctcaaagagctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaatttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaataaagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacgtaaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcatggtctcaaggtcactttaaagttgacctaaattaaaaaaaattttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgacagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggactttgaaatgcgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaataccgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaagtaggtcacagtgacctactttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagccttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttttggtatttgacagctaaattactatatttcagacactatttgacctacaatcatcaaactttgtcagttgatgcatcttgagtcttcggagtgtatcgaccaaaaagtaggtcactgtgacctacttttggcatttgacagttatatttatatatttcagtcactaattgacctacaatcatcaaaccttgacagttgatgcatcttgagtcaatggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttggaatttgacggctatatttatatatttcaaatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaacttgacctacttttggaattggacacctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgtgtcttgcatgttcaaagggtgttgaccaaaaagtaggtcaccttgacctacttttggaattggacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccagaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaaaatcatcaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacactgacctacttttttttaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgtttataatttggattacatttattatcttataaatgtggatttaaaatgcataagggggtagatctatataataaatatatcattactacagtaacttgatccgaagagttggatcacgtcgagttgacaggcgcagatcatcagatcaaactcgatgcttcgagtcttgtgtgatctgatgatccgcgctggtgaccaactcgacgtgatccgactcttcggatcaagttactgtagtaatatatagttatcgtacatgttgtaattgttaataaaatactgtttaccaatgcaaattcccaaaaataaatcattggatagataa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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