2024-11-21 18:41:00, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_048880159 7310 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis carboxypeptidase A4-like (LOC125651525), transcript variant X1, mRNA. ACCESSION XM_048880159 VERSION XM_048880159.2 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079168) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2023 this sequence version replaced XM_048880159.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7310 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="5" gene 1..7310 /gene="LOC125651525" /note="carboxypeptidase A4-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 long SRA reads, 3 Proteins" /db_xref="GeneID:125651525" CDS 220..1533 /gene="LOC125651525" /codon_start=1 /product="carboxypeptidase A4-like isoform X1" /protein_id="XP_048736116.2" /db_xref="GeneID:125651525" /translation="
MVLWNGNAVSTTQDKGRWFGRMMLAIFSHIFLLGSIQCLNVKPQREVYAPNYRFYHNLTQIDTEVKLLSNFPDYVKVYRHFISRQGRPMYLLHISNFSDSEHKSFKDSHSPRYKPQLLFSYGEHAREFLPVESAIYFIKNLTGGLHSSADVFSRKFTQRILLHSDLYIILMANPDGRHFVEQTQNYCWRGTSTGVDLDRNFGWEFGGKGSSSDPNDEEYRGEEAFSEPESKVFQDISADIAFDAFFSFHSGINHIYIPYSDTKSLQLKREPDNVQEMLSLASRLSRCSRYNYRYGTSHHLINYTADGTIFDYMAGIKKIPFSFTIELWGKQHHRPSCFDLFNPENRKLKEVVKSLHPLYINIIMYLSEWKSRNHQDLTNPNAEHPSLVLGYMLLGITIAVSLMVCLHRKWRNCPQLYHHHRIVSLKTLSSSFSAKNL"
misc_feature 559..1248 /gene="LOC125651525" /note="Peptidase M14 carboxypeptidase A-like domain; uncharacterized subfamily; Region: M14-CPA-like; cd06227" /db_xref="CDD:349446" misc_feature order(589..591,598..600,784..786,811..816,964..969, 985..987,1195..1197) /gene="LOC125651525" /note="active site" /db_xref="CDD:349446" polyA_site 7310 /gene="LOC125651525" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aattcaaacccggaacagaccacgattaacgttagcattcgatccaggttccttcagataatattcacaccagcttatggtaaacatgtcagatctgacaatcgacgcgatgacataactgcgataacaatcacacagtgccacttcattctgacattgtatttgcaagaaaatcttcgtttctcagtgaatattaaatatggccatgattgtgtaggaatggtattatggaatggcaacgctgtatccacgacccaggataaaggtagatggtttgggagaatgatgttggcaattttcagtcatatctttctactcggtagtatacaatgcttgaatgtgaaaccacagagagaagtttatgcacctaattacagattttatcataacttgactcaaattgatacagaagttaaacttctgtcgaactttccagattatgtgaaggtgtacagacatttcatttccagacagggtagacccatgtaccttttgcacatatcaaacttttctgactcagaacacaagagctttaaagactcccatagcccaagatacaaaccccagttactcttctcctatggagaacatgcaagagagttccttccagttgagagtgcaatatattttataaaaaacctaacaggtggtctgcattcgtctgcagatgtgttttctagaaagtttacccaaagaatactgttgcattcagatctgtacattatattaatggctaacccagatggacgacattttgtggaacaaactcagaattactgctggcgaggtaccagtacaggagtggaccttgaccgaaactttgggtgggagtttggtggcaaaggaagttcaagtgaccctaatgatgaagaataccgaggagaggaagcattctcagagccagagagtaaagtattccaggacatttctgcagacatcgcatttgatgctttcttttcttttcactcaggaatcaatcatatttacattccatattcagatacaaaatcgctgcagctaaaaagagaacctgacaatgtccaggagatgctaagtttggcctcacgtttgtcccgctgcagtcggtacaattaccgatacgggacctcccatcacctcatcaattatactgcagatggaacaatatttgactacatggcaggaatcaaaaagatacccttctcctttactattgagctgtggggaaaacagcaccaccgccccagctgttttgacttgtttaatccagaaaatagaaaactcaaggaggttgttaaatccctacatccactttacatcaacattattatgtacctctcagaatggaaatccagaaatcaccaggatttgaccaatcctaacgcagaacatccgtctctagtactgggctacatgttgttagggatcaccattgctgtctccttaatggtgtgccttcacaggaaatggagaaactgtccacagctttaccatcatcatagaatagtttccctgaaaaccctgagttcatcattctctgcaaagaatttgtgattttatgatgtaatgttattcagttttcactgtttttcagggaggtaactcttccatatccacaaatccctacaataacaagaaccctcacattgtgtttaaggaggtactctacatcttcataatggctgactttcttttaaaacatggatgaaaatatttatatcagcaacatttgtctattcatttaaaaaaaacattgcccagctgagtagctcagtaggttagcacatcgactactgaactgtagatcgcaggttccagtccagcaggggttttaaatttttttcagattgctttactactaaaactgcattttttgactagatagagttaatttgaaagttttcaatttcaaaatattgttgcacaaatcctccacatttatgtaaattttatggtttttatctgactacgatgatgagtcttgataagtcactattcgctattcagtatcttggctgtttaagggttgtcactcctcaaacttttgatacagttcggacatgccttctagaaaataaacacaatattttgaatagtatagctacattcagtgaccataacttaacttaataccatttcaaaccaaaaaactggaatacaatgctatgtttcatagcagaaggttgttttaaaagaaaaacctcaaagtctgctttaaacatgaaaattgcttttatttttaaactgatagcacacaatcaagcgagtcactgtcgtcatattagtgacacagtattatatttgattgaagtattgatttatactagcaaatatcattagtcccctactggcagagacaaaggggactgttagtttgcactctgtccgtccaaccgtctgtcacaacttagttttcgggatctctattcattatgctttgatttaggaagctgaaatttgacatgtggtttactactgtatgtttacagatcagcttagggttcttcaccattgagtgatttttacaagatttatgggactttgtgccaagtaagtgtttttctgactcctccactatgctttaacttaggaatttgaaatttgatatgtggttatcaaatgagtagatacatattaggttttatttccgttacagctgaattaattaataattattctaacaaaaattgtaaaatttagtctcatggttggctgaattaattcttgcactctgcctagttctctgtattttttcatgaagacatttataatccacttaatctgattcgccgcttccttatgacaagaggtcaaaattacgatgtttttctggtattaaaatatcatatctgatccaaaaatatccaaatatagattttttaatttttgtttaaacacatgagatctagacatcatgtgccaacagcaatgcaggtagaaagttgtgaattttgaagatgctaggtagaaatcaaaatgctgatctttatatgcttcattgtacagcgtacaatgtactggaagatgacccagtgtggttgttcctaacaatagaactcgaggattatgatatgaatgaagagttgtttatacatgtacgatgatagagacatctttgtttgccgatgattcctgacatgttttgattatgaaaatcaaaggaagtgcaaaaggtgatacaattgaaatttcaaggggaccgcacacagaatattatgcaaataacttgacttgggacatgtgttgctatgaaatcaatctgattaaaatacaggtctctcaaatagcactgtgcactatttatatgaattgtatcagattgtatgaaatacttatagaatacttgttttaaaataatttcagtttatatttaaacattaaatttcagcacaaaataaacaattctatccaaaaataacatctttgataccagtttaaaatgtaggctatttcaaaactaaaaattgcattttggaaaaaaaatgttattctttaaaattagtgcaaacaggtcaaaagactataagatattgataaattttcagaattgaatgtacatactgggcagagaagagctacatgtacctaattttcatgcagttcgttaattagcattacttattttacattacttttatgaagactgttaaaatttaagtgcaaaaaaggtgaaaataaatcaatatctcaacctcactagtaagcacactgtcttcccatttttagtttgtatttactgtattgatgtcagaaatatactttgcacaagaattacaatgaggagtgacctcccctttaaccggcccaagtctcatacacaagaacagcacataacaggttttttttttaaacaaaagtgtttgagaaacaatattctgtactgatgtatatcaatttacaattggactacatatacaattgtatatatatttattacatggaagtcaagacatacaaaaacatgatgattatacacataaagtgacaatttcctgtgaaaggacccaaatacattgttaccatgattacttccttttttgaatgttttgtatagaccggtatactcactgggtttttttttcttctctcgttttttatatacaagtatacacttttgcaacatttttaatgtaatatttacatgtactaaaatacaaggatcatttcttattattgaagtcttgaaacatttctcaaaacaaaaaaaaaacaaaaaaaacctcactttctctgccatatcaagtatttgacactttcaacaaagtaaaaatatatctagtgtgtgttgaaaagatacttgactgtaggaaagtctcttggatttccatgcatgagtgggtagaaaacttctgacaggaattgattagggttggtatgtttgttaaagggaaaatatctcagtcacactccattgatacccatggggagactttctgtgagctggctataccttcgtctatagatttccgaagattgcttgatagttcgaccagtaactagtgacacaaattgaatctgtgaacaagaatgtgttagtgaacaaagtagatttacagttatttatttgaacatttatttattgcatagcttttgccaagctatctgagacattttaaaatatgtacattgtgattggtccatagtgatattgtccaataatacatgtattcattattattggttaatgttatacaatatatacatgtattctttatcattagtctatattatacaaaatatacacatatttatatccttggtccataatgtatccttttcaggttaacttaatttaccatgactttgatacatgttatattgaatgcatatatttatagtagaattttgaatcattcatagactaattctctcgaggttgcacctcatgatactgctataaaataatatatgtattgttaaagttacagtccctccttgatatatacttctttattatatacccatcaatgtttcgtttttcgatactgtggatttcacggtttcccggatcaccacacagt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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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