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2024-07-15 05:39:38, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_048734512            2744 bp    mRNA    linear   INV 21-JUN-2022
DEFINITION  PREDICTED: Nematostella vectensis DNA ligase 1-like (LOC116610563),
            mRNA.
ACCESSION   XM_048734512
VERSION     XM_048734512.1
DBLINK      BioProject: PRJNA847078
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Nematostella vectensis (starlet sea anemone)
  ORGANISM  Nematostella vectensis
            Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria;
            Edwardsiidae; Nematostella.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064044) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Nematostella vectensis Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Nematostella vectensis"
                     /mol_type="mRNA"
                     /db_xref="taxon:45351"
                     /chromosome="11"
     gene            1..2744
                     /gene="LOC116610563"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 95% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:116610563"
     CDS             192..2744
                     /gene="LOC116610563"
                     /codon_start=1
                     /product="DNA ligase 1-like"
                     /protein_id="XP_048590469.1"
                     /db_xref="GeneID:116610563"
                     /translation="
MTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELKEKELENDRQYQTIIDLKDELKSLTASAKEMKQNQNESEELAACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNGSEELDACRSELEKAKEEIEKARASYDKEKDRLEKLNKEMTDELQEKELENDRQYQTIVDLKDELKSLTASAKEMKQNQNESEELAACRSELEEAKEEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASHKEMKQNQNGSEELAACRSELEKAREEIEKAWALYDKEKDRLEKLNRQMTDELQEKELENDRQYQTIVDLKDELKSLTASQKEMKQNQNGSEELDACRSELEKAKEEIEKAWALYDKEKDRLEKLNRQMTDKLQEKELENDRQYQTIVDLKDELKSLTASHKETKQNNNGSEELAACKSELEKAKEEIDKAWALYDKEKDRLEKINWQMTGKVLICNYSDGLVLSSPSVFGIPDETLALVFHILHEYEQSLASTDRFN"
     misc_feature    195..2537
                     /gene="LOC116610563"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
ORIGIN      
tgagagctgattctgattgactgtgctgactaacattgattataatacttctttccttttagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctcaaggagaaagaattagaaaatgatcgtcaatatcaaacaattattgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaacttgagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcccgggcatcatacgacaaagagaaagatcgccttgaaaaactgaacaaggaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagcgctaaggagatgaagcaaaatcagaatgaaagtgaagaacttgctgcatgtagatctgaattggaggaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacggcaagccataaggagatgaagcaaaatcagaatggaagtgaagaacttgctgcatgtagatctgaattggagaaagcgagggaggagatagagaaagcctgggcattatacgacaaagaaaaagatcgccttgaaaaactcaacaggcaaatgacagatgagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccagaaggagatgaagcaaaatcagaatggaagtgaagaacttgatgcatgtagatctgaattggagaaagcgaaggaggagatagagaaagcctgggcattatacgacaaagagaaagaccgccttgaaaaactcaacaggcaaatgacagataagctccaggagaaagaattagaaaatgatcgtcaatatcaaacaattgttgatttgaaagatgagctgaagtcattaacagcaagccataaggagacgaagcaaaataacaatggaagtgaagaacttgctgcgtgtaaatctgaactggagaaagcaaaggaggagattgataaggcctgggcactatacgacaaagagaaagatcgcctggagaaaatcaactggcaaatgacaggtaaagtgctgatatgtaattattcagacggcctcgtactttcatctccctcggtgtttggaatccctgatgaaacactcgcacttgtttttcatatattacatgaatacgaacaaagcctggcaagcactgacaggttcaattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]