2024-04-25 08:25:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047584628 2228 bp mRNA linear VRT 07-APR-2022 DEFINITION PREDICTED: Mugil cephalus vimentin-related 2 (vimr2), mRNA. ACCESSION XM_047584628 VERSION XM_047584628.1 DBLINK BioProject: PRJNA821704 KEYWORDS RefSeq. SOURCE Mugil cephalus (flathead mullet) ORGANISM Mugil cephalus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Mugilomorphae; Mugilidae; Mugil. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061774) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mugil cephalus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2228 /organism="Mugil cephalus" /mol_type="mRNA" /isolate="CIBA_MC_2020" /db_xref="taxon:48193" /chromosome="5" /tissue_type="muscle" /dev_stage="juvenile" /country="India: Chennai" /collection_date="2020" gene 1..2228 /gene="vimr2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns" /db_xref="GeneID:125007803" CDS 109..1278 /gene="vimr2" /codon_start=1 /product="desmin" /protein_id="XP_047440584.1" /db_xref="GeneID:125007803" /translation="
MAMLRVSSYRKLFEEDSWGRNGGSSARCAGQYRASVRAAAVDDCDCDKLDFEAAKALSKEGLSQFVQDRAIIAALNDRLVRLIELAHCFEEENESLECQIVELEKKLNSRQASSSITSTAVEPDYSLDAVVERLRKQRDEILCDTEELYKELEHLKEEYEKAAQQRILIQHERQDVAEEVDAVTAECLALREQVAIYEEQLANMEAQHKTAVESLLDPDEETTGGATIRFGSPDMTRALAVKEHYCQLTESLQYERDVSSSAVVHGGDGKKLEVGGTERSTVKDLAKIKDVSEIKMLISELEKELAELEKCNEELEDEVEMKKAAYMDEIAELECTLDEMRQQEVDLQAQMKEQCEDYKELLSEKMARDMEIAAYRSLVEEEEQRLCSL"
misc_feature 307..1263 /gene="vimr2" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 2228 /gene="vimr2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtccgcgtcacctcggtgttacattctctgtgagtttaaaacccaccttggaacccgctgccgccaattgcctgttgcgtttggtcgagtctgaacccatctaaagatatggccatgctcagagtgtcttcttaccgcaagctctttgaggaagacagctggggtcgtaatggagggtcgagtgcgcgctgtgcggggcagtaccgggcctccgtcagggctgcagctgttgacgactgtgactgtgacaagttagactttgaagctgcaaaggctctgagcaaagagggtctgagccagtttgtccaggaccgcgccatcatcgctgccctcaatgaccgcctggtcaggctcattgaactggcccattgttttgaggaggagaatgagtcccttgaatgtcagatcgttgaacttgagaagaagctaaacagtcgacaggcctcctcaagcatcacctccacggcggtggagccggactatagtctggacgcagtggtggaaagactgcgcaagcagagggatgagatcctgtgtgacacagaggagctgtacaaagagctggagcatctgaaggaagagtacgagaaagctgcacagcagaggatcctcatccagcacgaacgacaagatgtcgctgaggaagtggatgctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacaagacggcggtggagagtctgctggatccagatgaagagactacaggaggagccactattagatttggcagccctgacatgactcgggccctggctgtaaaggagcactactgccagctgaccgagagcctgcagtacgagcgtgatgtgtcctcctctgctgtggttcacggtggtgatggaaagaaactggaagtgggaggaactgaaaggtcaacagtcaaagacttggcaaagataaaggacgtcagcgagataaagatgctgatctcagagctggaaaaggagctggctgagctcgagaagtgtaatgaggagttggaggacgaggtggagatgaagaaggctgcgtacatggacgagattgctgagctggagtgtactttagatgaaatgaggcagcaggaagtcgacctccaagctcagatgaaggagcagtgtgaagactataaggagctgctcagcgagaagatggccagggacatggagatcgctgcctacaggagtctggtggaggaagaggagcagagactgtgcagcctgtgatttcaggccgaagagtcggactggttggctggagtgtggctggacgctgctaaatgacacgtggattagaaaacaggcaaaacaggaaagtgaaaaacagacccccaaatcagcacttcagtgaagcttatggtaccagtgcagcaatttgagccgatgtaaacttatcatgacggattaatgccgtctggaggcctaagctgggtcaccgataacgggttgctggcagatgaccctgagactccaagaaggatggagctgtctgaaaccggtgggaggatgggtgatgagtgtgtatccctccagtacgtggcagggatgcgtccttaagtgggttttatctttagcggctcactgatacaattcatatatgttttgtcctctctttgttgaacaagtctcacgcagatacagacgcaaacaagctgaactgcgcggctccgctgagtcactcccgctctgataccacctcgtccatcactcaaacgccgtctgattgccaagctcttaacctgtgaccccttcactgttaacaaacatattgacagctctctcttcggtaactaaaagcatcttgccgtccccgtgcttttacagtcgtgcgctcatgttggttttgacagtcgactgtgcagtgctctgtgtttgcttttcaaatggctcgtgaagttgtttttctgcagctcttttcaaaatgagcacctggatatttccacaaaaaaaagaaaagaaaaaaagtcggcgtgattcattatttcttctttgaaaggcaacgtccccaattttctgtcatttcagaaatgagcatggtaatacattcctctgtaatcttttccttattttccacacaacgttaaagctgtctatgataaatcattttttggttcctgcctctgcacaagcatcaaatgtactttagattcaaatgaaataaaaccagttgcttgaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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