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2024-06-18 01:03:39, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       XM_046710202            1880 bp    mRNA    linear   INV 14-FEB-2022
DEFINITION  PREDICTED: Haliotis rubra biogenesis of lysosome-related organelles
            complex 1 subunit 3-like (LOC124274838), transcript variant X2,
            mRNA.
ACCESSION   XM_046710202
VERSION     XM_046710202.1
DBLINK      BioProject: PRJNA801670
KEYWORDS    RefSeq.
SOURCE      Haliotis rubra (blacklip abalone)
  ORGANISM  Haliotis rubra
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025765947) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Haliotis rubra Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Haliotis rubra"
                     /mol_type="mRNA"
                     /isolate="DU_JTF1"
                     /isolation_source="Aquaculture farm"
                     /db_xref="taxon:36100"
                     /chromosome="Unknown"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="Australia: Jade Tiger Abalone Farm, Indented
                     Head, Victoria"
                     /collection_date="2017"
                     /collected_by="Adam Miller"
     gene            1..1880
                     /gene="LOC124274838"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 70 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:124274838"
     CDS             94..585
                     /gene="LOC124274838"
                     /codon_start=1
                     /product="biogenesis of lysosome-related organelles
                     complex 1 subunit 3-like isoform X2"
                     /protein_id="XP_046566158.1"
                     /db_xref="GeneID:124274838"
                     /translation="
MMKTWYFNIPDDIPQGTVISGEASESEEEVDTSLQGDQELPALKVDRNRGENIQGSDPTQLPILTTTRMVTSKPKYDTLLHRKLRERNLQFHSHLVSLGSHAYMSAAKHINNTTQQLLKSHVAIQDVSHNMRLMTNDLFRLEDKINIISSCSLLPDINIELSS"
     misc_feature    <208..567
                     /gene="LOC124274838"
                     /note="Biogenesis of lysosome-related organelles complex 1
                     subunit 3; Region: BLOC1S3; pfam15753"
                     /db_xref="CDD:464847"
     polyA_site      1880
                     /gene="LOC124274838"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ccatgtaagaggcggggcaccagaacagatatgagcacatgatggagaagggacattataaaacagtcgttcagggagaggcatctgagtctgatgatgaagacatggtactttaatataccagatgacatccctcagggaacagtaatatctggggaggcatcagagtccgaggaggaggtggacaccagtctacagggagaccaagagttacctgccttgaaagttgacagaaaccgaggggagaacatccaagggagtgaccctacacagctgccgatcctcaccacaacccgcatggtgacaagcaaaccaaaatatgacacgctgctgcacagaaagctcagggagagaaatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgttacctgctacctgacatcaacatagaactgttgtcatagcaacaccatctcctcaagtaacccattaaatgacatcaatgcagaactgttgtcatagcaacacaatttcttcttgtaacctgttgcttgacatcaatgcagaactgttgtcatagcaacagatctcctcatgaaacctgctatctgacatcaacaaggactgctgtcatagcaacaccatctcctccagtaacccattgcctgacatcaacatagaactgttgtcatagcaacaccatctcttgtaaccttcctcactgacatcagctgttatcagtaaagccttaccattattctaccgagaggtcaactgatgttaaagagtcaatgaatcttccctttcttccatgcaagcaattgtgcaatatgtaggtagggtaaaactgaccttatttaaaacattcctttataaaacttatgattctgtgtaaaatcagatgtgactttcacaggagtcatcctccactgcagactgattgcctgcaaagccagctcatttcatgtcctgcagccaatactttggtttgaacagattgcctttgaaaattatgtatttatgaagttatttcatcacttgttggaaaacaacttgtccagggaaataacagaccagatctacactgatcatgaaacataatgatgtttgcatttattgagaaatgtcatatttttcattatcatatgaatgcatgatttgtaaatttaatggtataatattatttattttattgttaacaacaacaaaatgggtgttgatttgtttataaagctgttgtggattaagaactgttttattggttaaagaatgagcactgaatattgtctttgtgtaaatagatcaaacaatgttgatgtaccataattatgtcatataaaccactcaaaaaca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]