2024-03-29 16:13:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046409382 1836 bp mRNA linear VRT 03-FEB-2022 DEFINITION PREDICTED: Scatophagus argus vimentin like (viml), mRNA. ACCESSION XM_046409382 VERSION XM_046409382.1 DBLINK BioProject: PRJNA776026 KEYWORDS RefSeq. SOURCE Scatophagus argus ORGANISM Scatophagus argus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058505.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scatophagus argus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1836 /organism="Scatophagus argus" /mol_type="mRNA" /isolate="fScaArg1" /db_xref="taxon:75038" /chromosome="13" /tissue_type="muscle" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-06" /collected_by="Byrappa Venkatesh" gene 1..1836 /gene="viml" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 76 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:124069884" CDS 85..1452 /gene="viml" /codon_start=1 /product="vimentin like" /protein_id="XP_046265338.1" /db_xref="GeneID:124069884" /translation="
MSYRSAPQSSYRKMFGGDRVVSRSSYSSRQFSSSVRSPRVSYGLSSAPTIYAAKTQRLRSSAAMPRLASENLDFSLSDAINTEFITNRTNEKVQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDEIAQREDAESNMQSFRQDVDNAALARLDLERKVESLQDEINFLKKLHDEEMLELQNQIHQQQHVQVDMEIAKPDLTAALRDVRLQYENLASKNIQESEEWYKSKFADLTEAAARNNEALRVVKQEANDYRRQVQALTCEVDALKGTNESMERQMREMEENFSLETSGHQDTIGRLEEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPSFSSLNLRETMVDSKPHIETTTTKKVLIKTIETRDGQVINESTQNHDDME"
misc_feature 109..351 /gene="viml" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 352..1281 /gene="viml" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1836 /gene="viml" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
agtagcagtttagcaaacgccttcccaggcgcacagttgggacgggatcaccgctgagctgttgtctgcacagatacaagcgagatgtcttacagatctgctccacagtcttcttacaggaagatgtttggcggggacagagtcgtatccaggagcagctactccagccgccagttctccagctcggtgcgctcccctcgggtgtcctacggtctctcctccgccccgaccatctacgcagcgaagacccagaggctccggagcagcgcagccatgccccggctggcctcagagaacttggacttctccctgtccgacgccataaacaccgagttcatcacgaaccgcaccaacgagaaggtgcagatgcagtcgctcaacgaccgtttcgccagttacatcgagaaggtccgcttcttagagcagcagaataagatcctgttggcggagctggagcagctgcggggcaaaggcacgtcccgggtcggagatctgtacgaggacgagatgcgggagctgaggcgccaggtggaccagctcaccaacgagaaggcccgggtggaagttcaccgggataacctggcagacgacatcgacaggctgagggagaagttgcaggatgagatagcccagcgggaggatgctgagagcaacatgcagagcttcagacaggatgtggacaatgctgccctcgccagactggacctggagcgaaaggtggagtcactccaggatgaaatcaacttcctcaagaagctgcatgatgaggaaatgctggagctgcagaaccagatccatcagcagcagcatgtgcaggtggacatggagatagctaaacctgacctgacggccgctctgagggacgtccgtctgcagtatgaaaacctggcctccaaaaacatccaggagtctgaggaatggtacaaatccaagtttgctgacctcaccgaagctgcagccaggaataacgaggccttgagagtggtcaaacaagaggccaatgactacaggcgccaggttcaggcacttacctgtgaggtggatgcccttaaaggaaccaatgagtccatggagcgccagatgagagagatggaggagaacttctctctggagacgagcggtcaccaggacaccatcggacgtctggaggaggacattcacaacatgaaggacgagatggcccgtcaccttcgtgagtaccaggacctcctaaatgtcaagatggccctggacattgagattgccacctacaggaagctgctggaaggagaggagagcagaatcactactccactgccgagcttctcgtctctaaacctgagagaaacaatggttgattccaaacctcatattgaaaccacaacaaccaagaaggttctcatcaagaccatcgagactcgggatggtcaggtgatcaacgagtcgacccagaaccacgacgacatggagtaaaaatttagtctttgtctttcccaaacaatcaacaaaagcaatataaagaaacacgactcactggggctacaagcaagcgaatgaaccaacaacacacaaaaagaaaacagcttctaaaagtgcctttatgtgtgatgatccagtaagcctgttagctgacacaaactgctttgcttcttctcctctgctgaaagtatcatcttttgtcacatttgtttagacacaataatgagctcagcacaacttagaaatccttaacaaaagtctgcaattcttttctttgtaaccaaagtagtatttttgatgcacactccaggaagcatttatgctaaagatgtcacaattgcctgtacgcagcaataaaccattaagatggtaactcaa
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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