2024-03-29 22:17:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046394023 2297 bp mRNA linear VRT 03-FEB-2022 DEFINITION PREDICTED: Scatophagus argus early endosome antigen 1-like (LOC124061789), mRNA. ACCESSION XM_046394023 VERSION XM_046394023.1 DBLINK BioProject: PRJNA776026 KEYWORDS RefSeq; includes ab initio. SOURCE Scatophagus argus ORGANISM Scatophagus argus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058499.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scatophagus argus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 23% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2297 /organism="Scatophagus argus" /mol_type="mRNA" /isolate="fScaArg1" /db_xref="taxon:75038" /chromosome="7" /tissue_type="muscle" /dev_stage="adult" /country="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-06" /collected_by="Byrappa Venkatesh" gene 1..2297 /gene="LOC124061789" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:124061789" CDS 624..2297 /gene="LOC124061789" /codon_start=1 /product="early endosome antigen 1-like" /protein_id="XP_046249979.1" /db_xref="GeneID:124061789" /translation="
MTAELVWLKSLSEKQQTVNENLKTAVNELQKNEKTLNDSLAAEKVQIKSLREKHHTEVQHLREALQSHQDNEKILMRQINSLTAEVAQLKCLNEADQAEIQKLSTTVCDLENWAEKAQQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETIINKTQESLTAEVAQLKCLNEQDRRDKDELIEIATALVSLNETTQTENKHLLASVHDLQERETILNKTQESLTAEVAQLKCLNATNQAEIKSLKAEAHESQTLEEMLNNENKIMAGELAQQEFLTERLNNENKDLRTALQGLQDQLQEAMQLICDKDELITKQASEIAFKQQMVEELNMKKTIHDPKEMMQEEEILADVEDFRDEHRILAEDTEQPDSPEDQRPENVLETEHEEQRNASLLETTCEEKKNYNLPEHRDDSLQRIHPQSLQY"
misc_feature 744..>1829 /gene="LOC124061789" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" ORIGIN
ggcgacccattttatcaatctaacaggacagcgcaatccgcaactgatttattagtgggcagtctatagtgaacaagatggaagtgatacctgagagagaggacctttttcaaggaattcatgaactggaaatgagctacagatctcatcattggaggttgaaggataaagtacaggaaggaaatgaactgttgggtgagaaaaccagactgcaggaatccttccagtcaaaaataatggcactccagttggagttgaatgattcgtgggacaaggagacacatcttactcaagaagttcaaactttaaagaaagagctcacaaaaaatcaagacattaaggtacaggtatcaagtgatctccatgccaagataatcagtctgcaggagttgtttcagtcagaggtaaaagcacttcatttgaaattaaaagatgcaagggatgaaaataccaggctgcgtgagttgtcagacaagttggtcagtgaaaatacagatattaaagaagaactggaccaggtctccaatcttctggtcaaggaagaaaatgtcagggaggaaaatgacacttccataagaaagctgaaagaggagaatttgggcttgagtgaaagaaataaaaaaatgactgctgaactggtctggcttaaaagtctgagtgagaaacaacagactgtaaatgaaaatctgaaaacagcagtgaatgagctacagaaaaatgagaaaaccctgaatgacagcctcgctgctgagaaggtccaaataaaatctctcagagagaaacaccacacagaggttcaacatctgagggaagcgctgcagagtcatcaggataacgagaagattctgatgaggcagattaacagtctcactgctgaggtggcccaactgaaatgtctgaatgaagcagaccaagcagagattcaaaagttgagtaccacagtgtgtgaccttgagaactgggcagagaaggctcaacaagaccgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagatcgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagaccgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggagagggaaacaataataaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaatgaacaagatcgcagggataaagatgagttaatagagatagcaactgcacttgtaagcctgaacgaaacaacgcagacagagaacaaacacctcttggcatcagtgcatgatctgcaggaaagggaaacaatattaaataagactcaggagagtctgactgctgaggtggcccaactgaaatgtttgaacgccacaaaccaagcagaaattaaaagtctgaaggcagaagcacatgaaagtcagacactggaagagatgcttaacaatgagaataagatcatggccggtgagttggctcaacaggagtttctgacagagagactaaacaacgaaaacaaagacctcaggactgctttgcaaggtcttcaggaccaactgcaggaggctatgcaactaatctgtgacaaagatgagctaataacaaagcaagcctctgaaattgcatttaagcagcaaatggtagaggagctgaacatgaaaaagacaatccatgacccaaaagagatgatgcaggaggaggaaatattagctgatgttgaagatttcagagatgaacataggatcttggctgaagatacagaacaaccagactcaccagaggatcaaagacctgaaaacgtcctggagactgagcacgaggagcagagaaatgcgagtctcctggagactacatgtgaggagaagaaaaattacaacctcccagagcacagagatgacagcctccaaagaatccacccacagagcctccagtactga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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