2024-03-29 19:13:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046013582 1837 bp mRNA linear MAM 05-MAR-2022 DEFINITION PREDICTED: Meles meles vimentin (VIM), mRNA. ACCESSION XM_046013582 VERSION XM_046013582.1 DBLINK BioProject: PRJNA796981 KEYWORDS RefSeq. SOURCE Meles meles (Eurasian badger) ORGANISM Meles meles Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Melinae; Meles. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060072) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Meles meles Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1837 /organism="Meles meles" /mol_type="mRNA" /db_xref="taxon:9662" /chromosome="7" gene 1..1837 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:123947399" CDS 115..1515 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_045869538.1" /db_xref="GeneID:123947399" /translation="
MSTRSVSSSSYRRMFGGPGTTSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAEVEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEDNFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 154..417 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 418..1344 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" polyA_site 1837 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cctcggaggggcccggtcctctgccactctcgctccgggatcgcccgcgccagagacgcagtagcgctctaaccgcccacacccaccgcgccctcgctcgcctgtcctgcagccatgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccacgagccggccgagctccacgcgcagctacgtgaccacgtccacccgcacctacagcctaggcagcgcgctgcgccccagcaccagccgcagcctctacacctcgtccccgggcggcgcgtatgtcacgcgctcctccgcggtgcgcctgcggagcagtgtccccggcgtgcgcctgctgcaggactcggtggacttctcgctggcggacgccatcaacaccgagttcaaaaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctagccgaggtcgagcagctcaagggccagggcaaatcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaagtggagcgcgacaacctggccgaggatatcatgcggctccgggagaagttgcaagaggagatgcttcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcgcgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgaggaggaaatccaggagctgcaggcccagattcaggaccagcatgtccagatcgatatggatgtttccaagcctgacctcacggctgccctgcgagatgtacgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaacgatgccctgcgccaggcgaagcaggagtcaaatgagtaccggagacaggtgcagtccctcacctgcgaagtggacgccctcaaagggactaatgagtctctggaacgccagatgcgtgaaatggaggataactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggcccgtcaccttcgggaataccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggtcgatactcactcaaaaaggacacttctgatcaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaagatggcacagagtcggtgcagcggtcactaccagcaagaataaaaacagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctctagttcttaagaaccaacactcttaaaagatttaggaaaaagtttacaacataatctagtttaccaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaataactgctttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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