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2024-03-29 19:13:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_046013582            1837 bp    mRNA    linear   MAM 05-MAR-2022
DEFINITION  PREDICTED: Meles meles vimentin (VIM), mRNA.
ACCESSION   XM_046013582
VERSION     XM_046013582.1
DBLINK      BioProject: PRJNA796981
KEYWORDS    RefSeq.
SOURCE      Meles meles (Eurasian badger)
  ORGANISM  Meles meles
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Musteloidea; Mustelidae; Melinae; Meles.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060072) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Meles meles Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Meles meles"
                     /mol_type="mRNA"
                     /db_xref="taxon:9662"
                     /chromosome="7"
     gene            1..1837
                     /gene="VIM"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 38 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:123947399"
     CDS             115..1515
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_045869538.1"
                     /db_xref="GeneID:123947399"
                     /translation="
MSTRSVSSSSYRRMFGGPGTTSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAEVEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEDNFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
     misc_feature    154..417
                     /gene="VIM"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    418..1344
                     /gene="VIM"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     polyA_site      1837
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cctcggaggggcccggtcctctgccactctcgctccgggatcgcccgcgccagagacgcagtagcgctctaaccgcccacacccaccgcgccctcgctcgcctgtcctgcagccatgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcaccacgagccggccgagctccacgcgcagctacgtgaccacgtccacccgcacctacagcctaggcagcgcgctgcgccccagcaccagccgcagcctctacacctcgtccccgggcggcgcgtatgtcacgcgctcctccgcggtgcgcctgcggagcagtgtccccggcgtgcgcctgctgcaggactcggtggacttctcgctggcggacgccatcaacaccgagttcaaaaacacccgcaccaacgagaaagtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctagccgaggtcgagcagctcaagggccagggcaaatcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaagtggagcgcgacaacctggccgaggatatcatgcggctccgggagaagttgcaagaggagatgcttcagagagaggaagccgagagcaccctgcagtctttcagacaggatgttgacaatgcttctttggcgcgtcttgaccttgagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactccatgaggaggaaatccaggagctgcaggcccagattcaggaccagcatgtccagatcgatatggatgtttccaagcctgacctcacggctgccctgcgagatgtacgccagcagtatgaaagcgtggctgccaagaaccttcaggaggctgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaacgatgccctgcgccaggcgaagcaggagtcaaatgagtaccggagacaggtgcagtccctcacctgcgaagtggacgccctcaaagggactaatgagtctctggaacgccagatgcgtgaaatggaggataactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggcccgtcaccttcgggaataccaggacctgctgaatgtcaagatggctctcgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaatctggattccctccctctggtcgatactcactcaaaaaggacacttctgatcaagacggttgagactagagatggacaggttatcaatgaaacttctcagcatcacgatgaccttgagtaaagatggcacagagtcggtgcagcggtcactaccagcaagaataaaaacagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaataggaataacctctagttcttaagaaccaacactcttaaaagatttaggaaaaagtttacaacataatctagtttaccaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaataactgctttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]