2024-03-29 19:04:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045782423 4229 bp mRNA linear MAM 05-MAR-2022 DEFINITION PREDICTED: Ursus americanus argonaute RISC catalytic component 3 (AGO3), transcript variant X2, mRNA. ACCESSION XM_045782423 VERSION XM_045782423.1 DBLINK BioProject: PRJNA795466 KEYWORDS RefSeq. SOURCE Ursus americanus (American black bear) ORGANISM Ursus americanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025578495) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ursus americanus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4229 /organism="Ursus americanus" /mol_type="mRNA" /isolate="UA15103" /isolation_source="kidney" /db_xref="taxon:9643" /chromosome="Unknown" /ecotype="Eastern" /country="USA: Penobscot nation, Maine" /lat_lon="45.745671 N 68.499951 W" /collection_date="2015-05-18" gene 1..4229 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:123782310" CDS 102..2543 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_045638379.1" /db_xref="GeneID:123782310" /translation="
MMESKDLVPECRKWWLREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 177..461 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 489..641 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 642..1004 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(798..800,843..845,885..887,897..899,951..953, 972..974,978..980) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1137..2414 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1548..1550,1560..1562,1596..1607,1614..1616, 1638..1640,1647..1649,1659..1661,1671..1673) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1752..1754,1758..1760,1968..1970,2382..2384) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 4229 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaaccagacaagtgtcctaggagagtgaacagtctgtgcaccagagcatgatggagtcaaaagacttggtaccagaatgtaggaagtggtggttgagggaggtggttgactcaatggttcagcattttaaggtgactatatttggggaccgtagaccagtttatgatggaaaaagaagcctttacacagccaatccactacctgtggcaactactggggtagatttagatgttactttacctggggaaggtggaaaagatcgacctttcaaggtgtcaattaaatttgtctcccgggtgagttggcacctgctacacgaagtactgacaggacggaccttgcctgagccactggaattggacaagccaatcagcactaatcccgtccacgccgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccccctgggagggggcagggaagtatggtttggattccatcaatctgttcgacctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaacggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtatgtaatatcgtggcagggcaacggtgtatcaagaagctaacagacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccgtttgttcaggagtttcaatttaaggttcgggatgaaatggctcacgtaaccggacgtgtacttccagcacctatgctacagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgggggaagcaatttcacacaggagttgagataaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatactgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattatcgtcatcctgccaggaaagacgccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggccacgcagtgtgtccaagtcaagaatgtaataaaaacatctcctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggacgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggccagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaactgaaagatgcatcgacatacagcatatgtttcccgtggagtcagttgagtggggatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaaaaagtaaagaaaaagtacatgacagtttaaaaaaaaacacacctacatgaataatcaaagtgattgttcacgattatgtgtgcaaaaaattaatgtgcattcgtgtattcttgtaaaaggtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacactgataatagatatatatgtgtctgggcgtgtattttacagttcattccactggggaactttctttcccttttattattttcccaccaccactttgatttttctctctacctcccttgcctcctcacctacgttttttccctaatgctaccagtgacactcagatgttcatgtatctggttcatttgggtgtgaagcatggcaaactagatttttatttttattttgcacaccctactcctgtctcttgtctcatacacaattgcaagtcctcaactcttgatattgctttcttaacaaacaaaattatatatatatatatatatacatatatgtgtgtgtgtatatatatatatatatataatgtttctgtgagagtgcgtgtctgccccctcctgctctgaaattacatttgccatttgtgcaatgtgtacataagcagtagcaactgtaaactattctttttcattttgttaaagctgctataaatataaaaccttgtcagaagttgtaactcagaaatttctcctgtaagtgatatgtattctaaagccttctgtttctatgggttatacatgaaaatcccttatagcttttataaagggcaaatattctaaatgattggaactctttagggttgaggcctctgaaattgggtggagagagagaaggggttcttgagggtttttttaattttaattttttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgcgtatatataaacatatatgtatgtgttttgaagtacagcttccttttctttcatatttattagaatagtgctttaataattagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaacttgttcttgctgtcttttagtgcaataagcagttctaaaggaaagctgtgtctgtttgatatctttaccacggatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagcatatcttctaaaaattgtaatgaaaatgaaggaagttaaatttcctaagtgaatctgaccttgaatatta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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