2024-04-26 20:18:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045425172 3943 bp mRNA linear PLN 19-APR-2022 DEFINITION Blastomyces dermatitidis ER-3 RNA interference and silencing protein (BDCG_09384), partial mRNA. ACCESSION XM_045425172 VERSION XM_045425172.1 DBLINK BioProject: PRJNA319322 BioSample: SAMN02953741 KEYWORDS RefSeq. SOURCE Blastomyces dermatitidis ER-3 (Ajellomyces dermatitidis ER-3) ORGANISM Blastomyces dermatitidis ER-3 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Blastomyces. REFERENCE 1 (bases 1 to 3943) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE The Genome Sequence of Blastomyces dermatitidis strain ER-3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3943) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3943) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE Direct Submission JOURNAL Submitted (06-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025544788). COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..3943 /organism="Blastomyces dermatitidis ER-3" /mol_type="mRNA" /strain="ER-3" /db_xref="taxon:559297" /chromosome="Unknown" gene 1..>3943 /locus_tag="BDCG_09384" /db_xref="GeneID:69030809" CDS 788..3943 /locus_tag="BDCG_09384" /codon_start=1 /product="RNA interference and silencing protein" /protein_id="XP_045273726.1" /db_xref="GeneID:69030809" /translation="
MSGKPQRKGRGSARVDRGGGGGGRGGRDGGGQRHPIFGQTPDTPRNRREGVASGDAAQASAISCAGFSDLEIFSYQSHVPQPNSTVQSVENHVNTAVLALSSTSKEPKLPQRPTFGTQGNKVTLYANYFELAVKQDLSLYRYKIILDPDERGRLPIGRKAKQIIRLFLDQEFYKLSDKIASDFKSTIISSVELEPLQKLPYIVTYQAEDELEPAPNARMYTLKVTRTGTLQVSALVDYLSSTSANAVFGGKEEVIQALNVVMGYYPKDSEHIANVGTNKHFFIKPPDVEKWDLTGGLEVLRGFFGSVRAATARILLNVQISNVAVFAEGPLPRVMMSFFQSYGHSMGKLDRFLKSVRVQLTHMKKVGSDGREVLPIKTILGVATIDDGRGMKNKPRVQRVGAGPKDVTFYKEPNADDEMLGANTSSTAGAYVSVFEFFRDIRKITLENPDLPVVNIGSRERPIYLPPDVCIVLPGQAPNMTLSTTQTQQMIKFAVRRPALNAKSINTKGAQILGASQPANSTLAGFGLAVQPGLITVPGRVLQGPQVRYKSVGRDARPPTNPNSGSWNLQRNQFSVAKPLKNWACLWIQKRDTSLPWPDAETLSSQALDPFIRQLKQLGMTVDQPLIHICPDDFERSIEEHIASVLQFKPSLQLIFFILPVVSSIYSRIKYLCDVKWGVHSICVVAGKFAKERNCQYFSNVALKFNLKLGGTNHTLDPSKLGFISEGKTMVVGLDVTHPSPGSSSNAPSIAAIVASIDQDLTQWPADVRIQPSRQEMVSGLDELLKSRLRLWAKHHRTAYPENILVYRDGVSEGQYNTVLNEELPLLQKACRSLYPAQQTRRGLPRLSIIIVGKRHNTRFFASAPAAADRSFNPRNGTVVDRAVTDARNWDFFLQAHTALHGTARPGHYYLVYDEIFRSSVVKPSLARLTGGIGANVADAVEALTHNMCYLFGRATKSVSVCPPAYYADLVCTRARCYLSRLFEAGSAAGSVAAGSVAGGGRSMSSLEVGLAKLSTAMPQGGEGDGGNDQQEARVSEVRIHELVRDSMFYI"
misc_feature 1094..3937 /locus_tag="BDCG_09384" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 2351..3724 /locus_tag="BDCG_09384" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2783..2785,2795..2797,2831..2842,2849..2851, 2876..2878,2885..2887,2897..2899,2909..2911) /locus_tag="BDCG_09384" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2990..2992,2996..2998,3212..3214,3692..3694) /locus_tag="BDCG_09384" /note="active site" /db_xref="CDD:240015" ORIGIN
caaacacccattatttaaaaaataactcaccgtttcgtggctgctttcaagcttgtcaatcagtagttaaataccctttctttggtaatttctgaaggggaaataattatttctaccgttttacatttatttagctcttccatgcttgttgctgctgctgattgttcttggacatgttcaatttctgcttattccctttttatgtcctccgttttctttccttcattcaagctctacaagggatcttacccccgttctcgttctcgttctcggctacaaccaaatggaacaatctaacatcaaaaggaagaagtctgcatggcaaaatcgtgcattcaggatacgggggactagggaaaattgcgacagccctagagggagggccgttgggaaacaagcaactccattcaatgaaggcttgaagccttgaatcctggaaaccccttcgacatggcctgcatatccccttggtactcccgtttgcacaaacccgaaccgtctgttcattgcgtacgcactcttgtatatatatatttggcggctgttcccgcctcctcgccgtctgcatcatgctatgtcttgctcttcagcactcatctacaagtgtgtgcgtttggttggatacatcatataatgattatcatgaatctctgacggcttatttgataccccttacacttgttttacgtctaccgatcttgaatccctattttctacaattgtgtcgatttactctgtgtgcgtgtgtgtgtgtgtgagagagagtgagagagagagagagagagagatgtcaggaaagccacagaggaaaggtcgaggatcagcgcgagttgaccgcggtggtggtggaggtggccgcgggggccgggatgggggtgggcaaagacatcctatatttggacagactcctgacacccctcgtaataggagagaaggcgtcgcgagtggagacgccgcccaagcaagcgccataagttgtgctgggttctccgatctggaaatcttctcatatcaaagtcatgtcccccaaccaaatagtacggttcagagcgtcgaaaatcatgtcaacactgccgttctagccttgagttcgacatccaaggagcccaaactgccccagcgtccaaccttcggaactcaagggaataaagtcaccctatacgcaaactatttcgagttggccgtgaagcaggatctttctctctaccgctataaaatcattctagatccggatgaaaggggaagactccccatcggcagaaaagcgaaacagatcatccgcctgttcctggatcaggagttttataagctcagcgacaagatcgccagtgactttaagtccaccatcatcagcagcgtggaactcgaacctcttcaaaagttgccttatatagtcacgtaccaagccgaggatgagctagagcccgctccaaatgccagaatgtacactctcaaagttactcgcactggtactctgcaagttagtgcactggtggactacctttcttctaccagtgcaaatgctgtattcggcggcaaggaagaggtcatccaggcactgaacgtcgttatgggatactaccccaaagactcagaacatatcgccaatgtcggtacaaacaagcatttctttataaaaccccctgacgttgaaaaatgggacttgaccggcggactagaggtgctacggggattctttggcagcgtccgtgcagccactgcacgcattcttctgaacgttcaaatcagcaacgttgcggtgtttgcagaaggtccattgcctcgggtgatgatgagtttcttccagagttacggacacagtatgggaaagctggacaggttcctaaaatcggtccgcgtgcagttaacgcatatgaaaaaagttggtagtgatgggcgcgaagtcctacccataaagactattctaggcgtggccactattgatgatggccgcggaatgaaaaacaaaccaagagtgcagagagttggtgccggaccgaaggatgtgacgttttacaaagagcccaatgctgatgatgaaatgttgggcgcaaatacttctagtacagctggcgcctacgtgagcgtatttgaatttttcagggacattcgcaaaattactctggaaaatcccgatcttcccgtcgtcaatatcggaagccgggagcgtccgatatatttgccccctgacgtgtgcattgtattgcctgggcaggctcccaatatgactctaagcacgacccaaacccagcagatgatcaagtttgcggtccgccgccctgcgctaaatgcgaagtcgataaatacaaaaggagcacagatcttaggcgcttctcagcctgcgaactctactttggctggatttggacttgcagtgcagccgggattaattacagtgcctggacgagtcttgcagggcccacaggtcagatataaatcggtagggagggatgctcggccacccacgaatccgaattctggcagctggaatttgcaacgtaatcaattctcagttgcaaaacccctgaagaactgggcatgtctctggattcagaaacgcgatactagtctaccttggccagatgctgaaacgctttcgagccaggcattggatccattcattagacagttaaaacaattgggcatgactgttgaccaacccctgattcacatatgccctgacgactttgaacgatcgatcgaagagcatattgccagtgtgttacaatttaaaccttcgctccaacttattttcttcatcctccctgttgtcagcagcatctacagccgcatcaagtacctctgcgatgtcaaatggggcgtgcatagcatctgcgtcgtcgccggcaaattcgccaaagaaaggaactgccagtacttcagcaacgtcgctctcaaattcaacctcaaactcggcggcaccaaccacactctcgacccgtccaagctcggcttcatatccgagggtaagaccatggtcgtcggcctcgatgtcacccacccgtcccccggctcctcctccaacgcccccagcatcgccgcaatcgtcgcctccatcgaccaagacctcacccaatggcccgcagatgtccgcattcaaccctcccgccaggaaatggtctcggggctcgacgagctcctcaaatcccgcctgcggctctgggccaaacaccaccgcaccgcctacccggaaaacatcctcgtgtaccgcgacggcgtctcagaggggcagtacaacaccgtcctgaacgaggaactgcccctgctccaaaaggcctgccgctccctatacccggcgcagcagacacgcagaggcctcccgcgcctctcgatcatcatcgtcggcaagcggcacaacacgcgcttcttcgcctccgcgcccgccgccgccgaccgctccttcaacccgcgcaacggcaccgtcgtcgaccgcgccgtcaccgacgcccgcaactgggacttcttcctgcaggcccacaccgcgctgcacggcaccgcccgcccgggccactactacctcgtctacgacgagatcttccgctccagcgtcgtcaagccgtccctggccagactgacgggtggcatcggggcgaacgtggcggatgcggtcgaggcgctgactcataatatgtgctatctgttcgggcgcgcgacgaagtcggtgagcgtgtgtccgccggcgtattatgcggatctggtctgtacgagggctaggtgttatttgagtaggttgtttgaggcggggtcggcggcggggtctgtagcagcagggtctgtggcggggggtggtcgatctatgtcgagtttggaggtggggttggcgaagttgtctacggctatgccgcaggggggggagggggatggagggaatgatcagcaggaggctagggtaagtgaggtgaggatccatgagttggtgagggattcgatgttttacatttag
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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