2024-04-18 16:21:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045424736 4987 bp mRNA linear PLN 19-APR-2022 DEFINITION Blastomyces dermatitidis ER-3 RNA interference and silencing protein (BDCG_08965), mRNA. ACCESSION XM_045424736 VERSION XM_045424736.1 DBLINK BioProject: PRJNA319322 BioSample: SAMN02953741 KEYWORDS RefSeq. SOURCE Blastomyces dermatitidis ER-3 (Ajellomyces dermatitidis ER-3) ORGANISM Blastomyces dermatitidis ER-3 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Blastomyces. REFERENCE 1 (bases 1 to 4987) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE The Genome Sequence of Blastomyces dermatitidis strain ER-3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4987) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4987) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE Direct Submission JOURNAL Submitted (06-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025544786). FEATURES Location/Qualifiers source 1..4987 /organism="Blastomyces dermatitidis ER-3" /mol_type="mRNA" /strain="ER-3" /db_xref="taxon:559297" /chromosome="Unknown" gene 1..4987 /locus_tag="BDCG_08965" /db_xref="GeneID:69030443" CDS 303..3431 /locus_tag="BDCG_08965" /codon_start=1 /product="RNA interference and silencing protein" /protein_id="XP_045273388.1" /db_xref="GeneID:69030443" /translation="
MSGQQPRGQRGRGGGRGVGGDPGGQRGGQRGRGSDRGRGPHPIFDAPSGGRGRGDRGGFRGDRGGRGDRGGFRGGRGGGTRGPEVYSQASGGIPAPDPKVKKVENSYKGPAGSGKELSLESLSINRNFPLRPAFGTQGRPVLLWANYFEIVSSFNLTLHRYKVEVQEQDGKTPAGKKLKRIIELLLEEHFGNMKNQIATDYKATLVCKTAINLPQEMFSITYRLEYEDEPAPRARTYKVRVVAIGSLDVAPLLQYLSSPRSGEQLPAKEEIIQALNIVLGHNPKTNRELLSIGANKHFPLGRGGESYDLSGGLTALKGFFVSVRAATSRLLVNVQVKATPCYSEGSLPDIMNSFSASIRGPTHFHKLNRFLKRVRVSVNHIVRKNKSGRVILRIKTIEGLAHQSDGRNLQNPPQVPWLGAGPKDVKFFPDGPTPPAEGQSKKNGKKQKKGPVKPGGDSSTGSYISVYDYFKRNYPNIPELNNALPVVNVGSKEEPIYLPAEVCHVLPGQPANAKISPQQTQNMIRFAVRRPVENAKSIVVNGTQVLGFTPHLNPMLAGMGLSLLPNLITVPGRVLEGPAIIQYKGQSFKSPHGGNWNLQKVAFSHGSQLPAWTFLYYQDGRTDPAVVMESVDRFIDMARVQGLAVPVPSRPIAVNVPPRRDVEDIPLDPIFAEIRQQSRVRLVLVILPFASPQIYSQVKYRGDIKDGIHTICVVAEKFRKNQPQYFANVALKFNLKLGGVNHKLQPSKLGVISEGKTMVVGIDVTHPAPGSLSTAPSIAGMVASVDKVLGQWPATIRLQQQARAEMVSDLDIMLQSRLRLWQKNNSKSLPENILIYRDGVSEGQYGKVLDEELPLLRSACKAIYPADKTKKGLPKFTIIIVGKRHNTRFYPTDLKDADNNSNPNSGTVVDRGVTESRHWDFFLQAHTALQGTARPAHYYVILDEIFTGRKTAGRFDSIADELEDLTHNLCYLFGRATKAVSVCPPAYYADLVCERARRYLNRYFDVTPDTSVASSGASDVGPVPIGDDVRVHSDLVDTMFYI"
misc_feature 693..3425 /locus_tag="BDCG_08965" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1962..3302 /locus_tag="BDCG_08965" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2385..2387,2397..2399,2433..2444,2451..2453, 2475..2477,2484..2486,2496..2498,2508..2510) /locus_tag="BDCG_08965" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2589..2591,2595..2597,2814..2816,3270..3272) /locus_tag="BDCG_08965" /note="active site" /db_xref="CDD:240015" ORIGIN
agaacatatgggatcacgtgcaggctgagcgatccctacggcaacgccactggagccgctacagttagttggttacaccccaacaaaaaaacaaacaaaacatgccaagaatggcaaagagacagttggcaacgagttacataccctgcaaacttagcgctgggattgaggcctccagcaggggtcccgtcattcactggagcctcatctcaaatccacggctggtctgaaggatatacagtagtcagcttaatcccgattttttttgattgtatcattcttttccctaaccaagcagccaaatgtcaggacagcagcctcgaggtcagagagggcggggcggagggaggggagtggggggagaccccgggggtcagcgaggtggacaacgtggacgcggctctgaccgtggccgaggtccacatcctatcttcgatgcgccatcgggcggacgagggcgtggtgaccgtggcgggtttaggggagatcggggcggccgtggtgatcgtggtgggtttcgcggaggacgaggaggcggaactcgtgggccagaggtgtattcccaagctagcgggggtattcctgctccggatcccaaggtcaaaaaggtcgagaatagctataaaggacctgctggctccggaaaggaattgagtttagaatctctttcaattaacaggaatttccctctaagaccagccttcgggacacaaggaagaccagtcttactgtgggccaattatttcgaaatcgtctcaagcttcaatctcaccctgcaccgctataaggtggaagtccaggaacaggacggtaaaacccctgctggcaaaaagcttaagcgtattatcgagcttctgttggaagagcacttcggaaacatgaaaaaccaaattgcaactgactacaaagcaacactggtctgcaaaaccgcaatcaaccttccccaggagatgttttcgataacgtatcgtctcgaatatgaagatgaacctgctcccagagccaggacttacaaggttcgggtcgtcgcaattggttctctcgatgtggcaccgttgctccaatatctctcctcacccaggagcggggaacaactcccggccaaagaagagatcatccaggcattgaatatcgtcctgggccacaaccccaagacaaatcgcgaattgctttcaattggcgcaaacaaacactttccacttggccggggcggggaaagctatgatctttctggtggactcactgcactcaagggcttcttcgtcagcgtccgtgccgcgacttcccgcctccttgtgaatgtccaagtcaaagctaccccgtgctacagtgaagggagcctgccagatattatgaacagcttttcagccagcatacgaggccctacgcactttcacaaactcaaccgattccttaagcgagtacgcgtgagcgtcaatcatatcgtccgcaaaaataaatcaggcagggtcatattgcgaatcaaaactattgaaggtcttgcacatcagagtgatgggcgtaatttgcagaacccgccacaggtaccttggctaggagcaggtccgaaagatgtcaagttctttcctgatggaccaacacccccggcagagggccaaagcaagaagaacgggaaaaaacagaaaaagggccctgtgaagccgggtggagattcttctacgggttcatatattagcgtctacgactattttaaacgcaattaccccaatatccccgagttgaacaacgcattaccagttgtcaatgttggcagcaaggaggagccgatctacctgcctgctgaggtctgccacgttctgcctggccagccggcaaatgccaaaatctccccccaacagactcagaacatgattcgctttgcagtccggagacccgtggaaaatgccaagtcgattgtcgtaaatggaacccaggtgctcgggtttaccccacatttgaatcctatgctggctggtatgggattatctctgttgccaaacttgattactgttcctggtcgagtgctggagggtcccgctattattcagtacaagggacagagctttaaaagccctcacggcgggaactggaaccttcagaaagtcgcattctcacatgggtcccagctacctgcctggacattcctttactaccaagacggccgaaccgatccagcggttgttatggagagcgttgatagatttatagatatggcaagggtacaagggctcgctgttccagtgcctagccggccaatcgctgtcaacgttccccctcgtcgagatgtggaggatataccactggaccccatctttgccgagattcgccagcagtcgcgagtgagattggttctggtgatcctaccttttgcaagccctcaaatttacagccaggtaaagtataggggagatatcaaggacggcatccatactatttgcgtagtcgcagaaaagttcaggaagaatcagcctcaatacttcgccaacgttgcgctaaaattcaacctgaagctcggaggagtcaaccacaaacttcagccgtccaaactgggggttatatcggaaggtaagacaatggttgtgggcattgatgtcacgcatcctgccccgggttcgctctccactgcaccaagcatagccgggatggttgcaagcgtggataaagtcctcggtcaatggcccgccaccatccgtcttcaacagcaggctcgcgcagagatggtgagtgatcttgatataatgctccaatctcgtcttcgcctttggcagaagaacaactccaagagcctcccggagaatatcctgatctaccgcgacggggtatcagaaggccaatacggcaaagtcctggacgaagaactacccctgctccgcagcgcgtgcaaagctatctacccagccgacaaaaccaagaaaggcctccccaaattcaccatcatcatcgtcggcaaacggcacaatacgcggttctacccaaccgatctcaaggacgcggacaacaactcaaatcccaacagcggaaccgtcgtcgaccgcggcgtcaccgaatcgcgccactgggatttcttcctccaagcccacaccgcactgcaggggaccgctcggccagcccactactacgtgatcctcgatgagatattcaccgggcggaagactgcaggccgcttcgacagcattgccgatgagcttgaagacctaacccataatctctgctacctgttcggacgagcaaccaaggccgtcagcgtctgcccgccggcgtactatgcggatctagtctgtgagcgcgccaggcgctacctaaatcgatatttcgacgtcacgcctgacaccagtgttgcttcgtctggtgctagtgatgtgggtcctgtgcctattggtgacgatgttcgcgtacattctgacctggtggatactatgttttatatctgagtgatatctgcgtacatatcgtgtcgaagggaaggggggtatcttgggatcggggaagttgtggaaaatgctatggaggttgtgaagtcagtatggaatagtacagtcattgctctgtcattagtggtattttgaaatcttgattttgctttttagggttggttattggtctatttaccgtgatcatatctgagtatatgattgggcacatatcaaattgataagttgacacagagctttacgagaatgcaattctaaactaatgtcttggatatttctcagagtttatctagcaaatgggtattaattgagtgatcagagttcaatcccatgcaaacctccaactactcaaatatactccgtgccaaaagctcattatcatcaccaaaatatccaccataccttcatattcatacatagagcgcacctgtcgaaatgcaaatgtacaaccttttaatcccaataaaaaaatcaaaagaaaaaaagccagctagagaaaaagagaaacctcccctccgccaatatcaccgaacaagccctactaccccccttccccccaacgaccgcacaacccccttcttcagccgaaactgcctctcaatcacctcctccgacacccctcccttatccctcatcgccaaaatatgcctaatactcacgacatccaaaaactcgcgcccgggatggctcggtcggccaacggactcgagttcgagttcggcagccttctctaaccgggcgcgggaggagagaacgaggagggctgggttggaggatgtggaggaggaggtggagggggggaagacgatggagagggattgctgaagctgcgggttttggggttggttgaaagggttgggggtgacgggcccgatggagcggagggaggcggcgaactgaggatcgcgggcttcgaggtcgatggctgtggttatttgaggccgggttcgctcgccttctcttctgcatggaatactggtcctggctgttcccgtcggcttgatgccctggccgctgggtccgcggctctggcaccaccgggcccggtggtcggtgcggagggtttcttggggtattgacgccgtgcagctgcattagctgccgcctttatgggtttcgacgatgatgcgcccattgcaattttgtgtgtgcaccgttactggggagtcggagaacgatactgtacagtaactagctcggtgagcggagaatgatggatggttttgcggagacggtccaagcttctacgggggccaaagctgacaggaatgtaggtttggtggaacgctaatttgcgtctagggctagaaggtggggcggggagagcagaataaataagacacacaggtgttctaggaatctcatgcatgggttctactaaataaataacgacctagagatacatctgttcatgaaaaaagcgctaggaagattccagctccaaagtgaagattctttgtcatatgccattttgccccgaatagcatgacgaaaaagcattagcaaaaccagaccccctagcgcagccctgcgaggcgcctctcctggacctcgct
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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