2024-04-24 23:10:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045419779 1122 bp mRNA linear PLN 19-APR-2022 DEFINITION Blastomyces dermatitidis ER-3 RNA interference and silencing protein (BDCG_04106), partial mRNA. ACCESSION XM_045419779 VERSION XM_045419779.1 DBLINK BioProject: PRJNA319322 BioSample: SAMN02953741 KEYWORDS RefSeq. SOURCE Blastomyces dermatitidis ER-3 (Ajellomyces dermatitidis ER-3) ORGANISM Blastomyces dermatitidis ER-3 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Blastomyces. REFERENCE 1 (bases 1 to 1122) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE The Genome Sequence of Blastomyces dermatitidis strain ER-3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1122) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1122) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE Direct Submission JOURNAL Submitted (06-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025544777). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1122 /organism="Blastomyces dermatitidis ER-3" /mol_type="mRNA" /strain="ER-3" /db_xref="taxon:559297" /chromosome="Unknown" gene <1..>1122 /locus_tag="BDCG_04106" /db_xref="GeneID:69026320" CDS 1..1122 /locus_tag="BDCG_04106" /codon_start=1 /product="RNA interference and silencing protein" /protein_id="XP_045276008.1" /db_xref="GeneID:69026320" /translation="
MLNANHGAGIEDGVASVEIAEAEEEVDEVIPEGEEPAVVLEVIEVEARVVVVVEVEEEDQDPKVVKVEDALHPMTKKTFNLGSLKLIKGFPSCPGSAQRPLAGSVPGSCSCCSSQRNWHQGNLATDFRSTLVSKTKFSSDETIIEVHYCSEGEDEPAARATTYKVRVLYMKSLSISELTNYLNFTDLGQSFVGKQELMQALNIFLNHYAKSADNLATIGLTKSFSLHQNAARGDLSSSLEVIQGFFLSVRIATCRILVNINISHGAFYHTGSLPALMSSYSVWNTVVLEKFLKLVRVQTTHLPEKCNRANEVIPRVKTIFGLARMDDGLGMAHPPCVRQHGAGAKDVEFWLDGEASSPGALKAEAKGQGQRDG"
misc_feature 370..615 /locus_tag="BDCG_04106" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 664..804 /locus_tag="BDCG_04106" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" ORIGIN
atgctgaatgccaaccatggcgcggggatagaggacggggtggcttccgtggagatcgcggaggcggaggaagaggtggatgaggtgattccagagggcgaggagccagcggtggttttagaggtgatagaggtggaggcgagggtcgtggtcgtggtggaggtggaagaggaggaccaagatcccaaagtcgtgaaagtcgaagatgcgttgcatccaatgacaaagaagacattcaatcttggtagtttgaagttaatcaaaggcttccccagctgtccgggatcagcccagaggccgttggcaggaagcgttcccgggtcatgcagctgctgctccagtcagcggaattggcaccaaggcaaccttgcaactgacttccggtctacccttgtctccaaaactaagttttcgagcgatgagaccatcatcgaggtccactattgttccgaaggtgaagatgagccggcggctagagccaccacatacaaggtccgcgtcctatacatgaagagtttaagtattagcgaattgactaactatctgaacttcacagatcttggccagtcatttgtaggcaagcaggagttgatgcaggctctgaatatctttctgaaccactacgctaaatccgcggacaaccttgccaccattggattgacaaagagcttttctctccaccagaatgcagcaagaggagatctcagttccagcttggaagtcattcagggcttctttttgagcgtgcgcattgcgacttgtcgcatcctggtcaacatcaatatcagccatggggctttctatcacactggctctttaccagcactcatgagcagttacagtgtttggaacactgtagtgctggaaaaatttctcaaattggttcgagtccaaaccacgcatctgcccgagaagtgcaacagagccaatgaggtaattcccagagttaagactatctttggacttgctaggatggatgatggattaggcatggcccacccaccttgtgttagacagcatggggcaggcgccaaagatgtcgagttctggcttgacggtgaagctagctcccctggtgcactcaaggcggaagccaagggacaagggcaacgagacggctga
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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