2024-04-20 11:04:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045404442 2934 bp mRNA linear PLN 26-FEB-2022 DEFINITION Colletotrichum gloeosporioides Protein argonaute (GCG54_00004393), partial mRNA. ACCESSION XM_045404442 VERSION XM_045404442.1 DBLINK BioProject: PRJNA786947 BioSample: SAMN13038012 KEYWORDS RefSeq. SOURCE Colletotrichum gloeosporioides ORGANISM Colletotrichum gloeosporioides Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum gloeosporioides species complex. REFERENCE 1 (bases 1 to 2934) AUTHORS Fu,F.F., Hao,Z., Wang,P., Lu,Y., Xue,L.J., Wei,G., Tian,Y., Baishi,H., Xu,H., Shi,J., Cheng,T., Wang,G., Yi,Y. and Chen,J. TITLE Genome sequence and comparative analysis of Colletotrichum gloeosporioides isolated from Liriodendron leaves JOURNAL Phytopathology (2020) In press PUBMED 32202483 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2934) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (25-FEB-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2934) AUTHORS Fu,F.-F. and Chen,J. TITLE Direct Submission JOURNAL Submitted (27-MAR-2020) College of Forestry, Nanjing Forestry University, 159 Longpan Road, Nanjing, Jiangsu 210037, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025544682). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2934 /organism="Colletotrichum gloeosporioides" /mol_type="mRNA" /strain="Lc1" /isolation_source="Liriodendron chinense" /db_xref="taxon:474922" /chromosome="Unknown" /country="China: NFU, Nanjing" /collection_date="2013-08-12" gene <1..>2934 /locus_tag="GCG54_00004393" /db_xref="GeneID:69011548" CDS 1..2934 /locus_tag="GCG54_00004393" /codon_start=1 /product="Protein argonaute" /protein_id="XP_045265226.1" /db_xref="GeneID:69011548" /translation="
MSSGSPARSRSGSQAAQRPNPFGPSMGFDPAKPEGGPEKDHKNTRIDLPAEAYTVGADRKNAGETPFAKRPGFNTAGKPCNLEVNQFRVKSWNDKATIHQYDVMISPTPMKYNVVFQKVWKHPTVQAMLKKYKCLWLCDGRKLAWAPVAINRGEERLTIDLDEGLPPPKSGKPRRKDENKFFFVIRQTKQIHLSALEAYLNNRMDWDNSVLEAMNFLDHLVRQYPTENLLSIKRNFYNEHRKKAFDLGNCIELVKGVYASVRMNQSFSGSIGRGLGLNVDVANTAFWKGNMQLHMFVRSFLETCDKRWKNQSPDDIARLLAPVRQNSKNGAVFVMSDAFKHLRKLAKLRFTPRHRGKEDWAKVYVIKAIAFGQEYGERGATANNIKFTNNGEEMTVAEYFQKTYGFKLQFPNWPLIETQKAGFFPMEVCIIKPMQRYPYKLGPDETAMMIKGAVTRPNVRKADIMEAKAQLAWKDDPYLKQYGVVFDEAMAKTQGCLLEPPKIQYANNVVSPMFAGRWDLRGKKFWVGNRQPLQSWGILILEDSTRKPAADQFVKMFKQTYTGHGGKILKDAVVIDSESRQGDMALALANGYKAIKKATGMTPQLIFCVLRFNNAGSYERIKKSADCRFGVLTQCVLARHVEKNQGQYHSNVAMKVNAKLGGITCRIPNQKLGPNSKAPAFFERVTMMIGVDVSHATPGIDAPSMATMTMSMDQDATFYAAAVDTNGYRVEMLSPVNTRNFLARLMPTWHKRMGHPAPPPHIIYFRDGVSEGQYAQVLEYEIGTLKAIFKEKYPGATLPRFTVIVATKRHHVRFFPQQGDKNGNPLPGTLLEKEVCHPFWWDFYLCSHVAIQGTARPVHYTVLVDEANMKPNDLQKMIYGQCYQYARSTTPVSLHPAIYYADLAAGRARAHENIATSQGFRSGPKAAEMVEEYGARGQSMFDGDRPTEALQLLPLGGTSGDADPASTEMFRNTMWYI"
misc_feature 415..663 /locus_tag="GCG54_00004393" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 691..864 /locus_tag="GCG54_00004393" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 973..1293 /locus_tag="GCG54_00004393" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1090..1092,1159..1161,1186..1188,1198..1200, 1252..1254,1264..1266,1270..1272) /locus_tag="GCG54_00004393" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1429..2736 /locus_tag="GCG54_00004393" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1852..1854,1864..1866,1900..1911,1918..1920, 1942..1944,1951..1953,1963..1965,1975..1977) /locus_tag="GCG54_00004393" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2074..2076,2080..2082,2299..2301,2704..2706) /locus_tag="GCG54_00004393" /note="active site" /db_xref="CDD:240015" ORIGIN
atgtcttccggcagccccgctcgttctcgctccggctcccaggccgcccagcgtcccaaccccttcggcccttcgatgggcttcgacccggccaagcctgagggcggtcctgagaaggaccacaagaacactcgaatcgacttgcctgcggaggcgtacaccgtcggcgcggatagaaaaaacgccggcgagacgcctttcgccaagcgccctggattcaacacggccggcaagccttgcaaccttgaggtcaaccagttccgagtcaagtcctggaacgacaaagccaccattcaccagtacgatgttatgatctcgcctaccccgatgaagtacaatgtcgtcttccagaaggtctggaagcatcccacggtccaagcgatgctcaagaagtacaagtgcctgtggctctgcgacggtcgcaagctcgcctgggctcctgttgccatcaaccgcggtgaggagcgtctcaccatcgaccttgatgagggccttccccctcccaagagcggcaagccccgccgtaaggatgagaacaagttcttcttcgtcattcgtcagacgaagcaaattcatctgtctgccctggaggcctacctcaacaaccgcatggactgggacaactccgtccttgaggcgatgaacttcctggatcacctggtccggcagtaccccacggaaaacctcctctccatcaagcgcaacttttacaacgagcatcgcaagaaggccttcgaccttggcaactgcatcgagcttgtcaagggtgtgtacgcgtccgttcgcatgaaccagtccttcagcggtagcattggtcgaggacttggactgaatgtggacgtcgccaacactgccttctggaagggcaacatgcagttgcacatgttcgtccgttccttcctcgagacctgcgacaagagatggaagaaccagagccccgatgacattgccaggcttcttgcgcccgtccgccaaaacagcaagaacggcgccgtcttcgtcatgtctgacgctttcaagcacctgcgcaagctggccaagctgcgtttcacccctcgccatcggggcaaggaggactgggcgaaggtgtacgtaatcaaggccatcgcattcgggcaggaatacggcgagagaggcgccaccgccaacaacatcaagttcaccaacaacggcgaggaaatgacggtcgcagagtacttccagaagacctacggcttcaagcttcagttccccaactggcccctcatcgagactcagaaggccggcttcttccccatggaagtctgcattatcaagccaatgcagcgctacccctacaagttgggtcctgacgagacggctatgatgatcaagggcgccgtcacgcgtcccaacgtgcgcaaggcggacatcatggaggcgaaggcccagttggcgtggaaggatgacccctacctcaagcagtacggtgtcgtcttcgacgaggctatggcgaagacccaaggctgcttgcttgagccccccaaaatccagtatgcgaacaacgttgtcagccccatgttcgccggccgctgggaccttcgcggcaagaagttctgggtcggcaaccgccagcccctgcagtcctggggtattctcatccttgaggactccaccagaaagcccgctgccgaccagttcgtcaagatgttcaagcagacctacactggtcatggaggcaagattctgaaggacgctgttgtcattgacagcgagtctagacagggtgacatggccttggccttggccaacggctacaaggcgatcaagaaggctacgggcatgacgccccagctgatcttctgcgtcctgcgcttcaacaacgctggctcctacgagcgcatcaagaagtctgcggactgtcgcttcggcgtcctcacccagtgcgttcttgcccgccacgtcgagaagaaccaaggccagtaccactcgaatgtcgccatgaaggtcaatgccaagctgggcggtattacctgccgtatcccgaaccagaagcttggcccgaacagcaaggcgcctgccttcttcgaaagggtgacgatgatgattggcgtcgacgtctcccacgcgacccccggcatcgatgccccttccatggccacgatgactatgtccatggaccaggacgccaccttctacgccgctgcagtcgacaccaatggctaccgggttgagatgctctctcccgtcaacactcgcaacttcctggcccgcctgatgcctacctggcacaagcgcatgggtcacccggctcctcccccccacatcatctacttccgcgatggtgtctctgagggccagtacgcccaggttctcgaatacgagatcggcacgctgaaggccatcttcaaggagaaataccccggcgcgacccttcccaggttcaccgtcatcgtggctaccaagcgtcaccacgtccgcttcttcccccagcagggtgacaagaacggaaaccctctgcccggcacccttctcgagaaggaggtctgccaccccttctggtgggacttctatctctgctcgcacgtcgccatccagggcacggcccgccctgtccactacactgtgcttgtcgacgaggccaacatgaagcctaacgatctgcagaagatgatctacggccaatgctaccagtacgctcgtagcaccacccccgtctctctgcacccggccatctactatgccgacctggctgccggccgcgctcgtgcccacgagaacattgcaacttcccagggcttccgcagcggacccaaggcggccgagatggtcgaggagtacggcgctcgtggccagagcatgttcgacggcgacagacctaccgaagctctccagcttctgcccctcggcggcaccagtggtgatgccgaccccgcatcgaccgagatgttcaggaacaccatgtggtacatctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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