2024-04-24 22:57:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045148896 3173 bp mRNA linear ROD 16-NOV-2021 DEFINITION PREDICTED: Jaculus jaculus argonaute RISC catalytic component 3 (Ago3), transcript variant X4, mRNA. ACCESSION XM_045148896 VERSION XM_045148896.1 DBLINK BioProject: PRJNA778790 KEYWORDS RefSeq. SOURCE Jaculus jaculus (lesser Egyptian jerboa) ORGANISM Jaculus jaculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059106.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Jaculus jaculus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3173 /organism="Jaculus jaculus" /mol_type="mRNA" /isolate="mJacJac1" /db_xref="taxon:51337" /chromosome="5" /sex="male" /tissue_type="liver, spleen" /dev_stage="adult" /country="USA: San Diego" /lat_lon="32.72 N 117.17 W" /collection_date="2021-06-15" /collected_by="Kimberly Cooper" gene 1..3173 /gene="Ago3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:101613082" CDS 200..2080 /gene="Ago3" /codon_start=1 /product="protein argonaute-3 isoform X4" /protein_id="XP_045004831.1" /db_xref="GeneID:101613082" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 200..541 /gene="Ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(335..337,380..382,422..424,434..436,488..490, 509..511,515..517) /gene="Ago3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 674..1951 /gene="Ago3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1085..1087,1097..1099,1133..1144,1151..1153, 1175..1177,1184..1186,1196..1198,1208..1210) /gene="Ago3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1289..1291,1295..1297,1505..1507,1919..1921) /gene="Ago3" /note="active site" /db_xref="CDD:240015" ORIGIN
atggagaatagatagaggagaaaaaactaatctgagaagccagtttaggaggcttttcaatccctagttcaggtgtcattccacatgttactcccttgagaagcaatgtttgacacccttctcccccatccagccatcccccaagtctgagttagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgaacagccaagacctctgactgattctcatcgggtaaaatttactaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagccatcaaacctttcctttacagttagaaaatggccagactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcaactgaagtacccacaccttccctgtctacaagtgggacaggaacaaaagcatacgtacctgccactagaagtttgtaatattgtggctgggcaacggtgtatcaagaaacttacagacaatcaaacttccactatgattaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccattcgttcaggagtttcaatttaaagtacgggatgaaatggcccatgtgactggccgtgtgcttccagcacctatgctccaatatggaggacggaatcggacagtagcaacaccaagccatggagtatgggatatgagaggaaaacaattccacactggagttgaaattaaaatgtgggctatagcttgttttgccacacagaggcagtgtagagaagaaatattgaaaggtttcacagaccagctacgtaaaatctccaaggatgcagggatgcccatccagggccagccatgcttctgcaagtacgcacaaggtgcagacagcgtggagcccatgttccgacatctgaagaatacatattctggactacagctcattattgtcatcctgcctgggaagacgcctgtatatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgtgcaagtcaagaatgtaataaaaacatctcctcaaactctttcaaatttgtgcctaaagataaatgttaaacttggaggaataaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtaactcatccacctgctggagatggaaagaagccttctatcgctgctgttgtaggaagtatggatgcccatccaagcagatactgtgccacagtgagagtccagagaccccgacaggaaatcatccaagacttagcctccatggtccgggaactcctcatccagttttataaatcaactcggttcaaacctactcgtatcatcttttatcgagatggtgtttcagaggggcagttcagacaggtattatactatgaactactggcaattcgagaagcttgtatcagtttggagaaagattatcaacctggaataacctacattgtagttcaaaagagacatcacacacgtttgttttgtgctgataggacagaaagggttggaagaagcggcaatatcccagctggaacaacagttgacacggacattacacacccgtatgaatttgacttttacctctgtagccatgctggaatacagggtaccagccgcccttctcactaccatgttttatgggatgataactgctttactgcagacgaactgcagctgcttacttaccagctctgccacacttacgtacgctgcacacgatcagtttctatacctgcaccagcgtattatgcgcacctggtggcattcagagccagatatcatcttgtggacaaagaacatgacagtgctgaaggaagccatgtttcaggacagagcaatgggagagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttgacaagtccaagtgtgttctctgagaggaaaaactgaaagatgcatccgacatacagtgtatgtttgcagtggagtcagttcagtaggaatgctccagccatatggaagccaacgctgtggtggggtctggtccttctgttgacccaaggaagatcgtttacttcatcaaggcacgcagcgccgttatgcaataggaagccagccagctgctttctgtgcggtctcctatagaagcaccgccgttgtcttgtgctcactcctatagtctcacccttctaatgcctttacctcaagttgctcggcagcacaactatctttgcaaaaaaagaaagagaaggtaaacgatggtttaaccaacacacacctacacaaatgagtccttgctcacagttctgtgtgcaaaaaaattaacgtgcatccatatattcttgtaaaaggagtctgagtatttttaaatatatatgtgcatatttcatatgcatatatatctgatctggatctaaattgataatagatatttatgtgtgtctgtgtatatatatattttatagttcattccattggggattttcttttatcttccccagtcacctttatttttttctctacctccttgctttcattatctacatttttccccgattgctataggtgacattcaaatgtcaaatttgattcatctgaagtaaagcacggcaaactagatttctatttttactttataaccctcactccggtctcggatctcatccacaattctgcgtcgtcgactctcgatgcagtcgtgtgggtgcctgcttcttcctgctctggacttgcacctgccatgtgtgccccgtgcactaagccgtagcaacccaggtgttcttctgtgaatttactcaagctgctatacgtagaaatccttgtcagaagttgtgactttctggtcaatggtaggtgtcctaaagcctcagattctatgacgtgtacatggaaatcccttagagatttttataaaggggaaatattttaaaaaacttaaactttaaggcctctgaaatttggtgaaaagagagaaggaattagggttgtttttatttttgctagtttac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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