2024-03-29 20:01:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045064195 6927 bp mRNA linear MAM 09-NOV-2021 DEFINITION PREDICTED: Mustela putorius furo argonaute RISC catalytic component 3 (AGO3), transcript variant X9, mRNA. ACCESSION XM_045064195 VERSION XM_045064195.1 DBLINK BioProject: PRJNA776022 KEYWORDS RefSeq. SOURCE Mustela putorius furo (domestic ferret) ORGANISM Mustela putorius furo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025422005.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mustela putorius furo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6927 /organism="Mustela putorius furo" /mol_type="mRNA" /isolate="JIRA1106" /sub_species="furo" /db_xref="taxon:9669" /chromosome="Unknown" /sex="male" /tissue_type="brain; liver; muscle" /dev_stage="Adult" /lat_lon="41.95 N 76.80 W" gene 1..6927 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:101678406" CDS 1379..3259 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X8" /protein_id="XP_044920130.1" /db_xref="GeneID:101678406" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 1379..1720 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1514..1516,1559..1561,1601..1603,1613..1615, 1667..1669,1688..1690,1694..1696) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1853..3130 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2264..2266,2276..2278,2312..2323,2330..2332, 2354..2356,2363..2365,2375..2377,2387..2389) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2468..2470,2474..2476,2684..2686,3098..3100) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 6927 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aatgtgggatggagagaaaggaaccatattataagcaataagctgaaaaaatagatttaagagccatgtccagaaaaaaactttgggtatagttactggcacatggaactaagtggaaatgaacagaccagaggatttactaggtttttgaaagaattgcttttggaaataaacttataaccctggtatatttgtcaggttcaaccagggaaacagaacctgtagatctagagagagatttggcttacgtagttgcagggcctcgtgaggcaagtctgaaatccatagaataggctgtcaggaagggcagactgggactagtgggcatgggctgaagctgctgttcacaggtggaagttctcctctgtctctcttggggaaacaccagccctgctgtaaggccctgctgttcagccctgctgaatgaggcccacccacattatccaggataatctcctttacttagtcaactgattatggattgtaattacatctattacttatgctataatacctagattagtgtttgaaaagctgacaactagttgatgcatttgaaaaacaaaaatatacctgacctgcaaagttactcaatctttgaaacaatcttcatgttcccaacccttcaggctcagtgactgtgctatattataaactagcttccaagaaggacatactcaccaacctataatcggaataatgattcattcataccaggtgtgaatggtagtgctgtcagttgaattgggagatagatgtgctgttgctgattagttggcagtacataccgtatataaataaatcaaatgttaatatgtccatagcttgaaaatcctctgggacatatggataaagattataataggtagttggaaatgcagataagaaaatctgtagtggtgggagctagaagtaaaagtatgggaactcctcagtatacaaatttatatttgaaactatagaaatggaaaaacttctttaggaatagtatttaaaataggaatgaggaggataaagccattgggaatcctagcatttaaggaaggaagaaggaccagtgagcagataacaattatcacaggcagtatgagagctaaataatggtgtcagggaacccaagggaggaaacattcatagagtagataatttcacagttaagcagtgggaacttttccagtaaaatcaagaataaaggaaggatatcaaggcgatgatattttagttattttgtgtttgctaacctctattcttcttacaggtttcagtctacatgttacttctttgagaagcagcatttgacaccctctccctccccatatccagccatcccccaatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcagccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaacggtcaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaagttaacagacaatcagacttccacaatgatcaaggcaacagcaagatctgcgccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaattcaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctgcagtatggaggacggaatcggacagtagccacaccaagccatggagtgtgggacatgcgggggaagcagtttcacacaggagttgagataaaaatgtgggctatagcttgttttgccacacagagacagtgcagagaagaaatactgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgtaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactctgggctacagctcattatcgtcatcctgccagggaagacgcccgtgtatgcggaagtgaaacgcgtaggagatacacttttgggtatggccacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctttcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagcgaccccgacaggagatcatccaggacttggcctccatggttcgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctactaacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatatttctctgagaggaagaactgaaagatgcatcgacatacagcatatgtttccggtggagtcaattgagtggggatgcctccagccatacagcagccaacactgtgtggggaccagggtctgatttttatgttgatacaagaaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaaaaaagtaaagaaaaagtaaatgacagttaaaaaaaaacacacacacctacgtgaataatctaagtgattgttcatgattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtaaaaggtatctgtgtatattttaaatatatacatgtatacttcatgtgcatatatatctggatctacattgataatagatatatatgtgtctgtgcgtgtattttatagttcattccattggggaacttaatttcccttttattatcttcccaccaccactttgatttttctctctacctcccttgccttcattacctacatttttttttcttaatgctaccagtgacattcagatgttcatgtatctggttcatttggatataaagcatggcaaactagatttttattttattttgcacaccccactcctgtctcttgtctcacgggcaattccaagtcctcaactcttaatattgctttctgaagaaacaaaattactacatatatatataatatatatatatatatatatatatatacacaatgtttctgtgagaatgcgagtctgccccctcctgctctgaatttacatttgccatttgtgcagtgtgtacataagcagtagcaaccttaaactattctttttctttagtctgttaaagctgctataaatataaaaccttgtcagaagttataactcagaaatttctctctataagtgatatgtattgtaaagccttctgtttctatgggttatacatgaaagtcccttataacttttataaagggcaaatattctaaatgattggaactctttaaggttgaggcctctgaaattgggtggagagagagaaggggttatttgaggggtttttttattttattttattttatttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattagagaactgtattggcaacgtcttttatagaaatgtaatcatgtttattttaagaactgacaacttgtttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatatctttaccacggatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagcatgtcttttaaaaatcataatgaaaatcaaggaagttaaatttcctaatgagtctgaccgtgattattagagatagagttgagctttgttttaagaaatgacagtgaatggggcacctaa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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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