2024-03-29 00:47:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045064189 6519 bp mRNA linear MAM 09-NOV-2021 DEFINITION PREDICTED: Mustela putorius furo argonaute RISC component 4 (LOC101680004), transcript variant X3, mRNA. ACCESSION XM_045064189 VERSION XM_045064189.1 DBLINK BioProject: PRJNA776022 KEYWORDS RefSeq. SOURCE Mustela putorius furo (domestic ferret) ORGANISM Mustela putorius furo Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025422005.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mustela putorius furo Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6519 /organism="Mustela putorius furo" /mol_type="mRNA" /isolate="JIRA1106" /sub_species="furo" /db_xref="taxon:9669" /chromosome="Unknown" /sex="male" /tissue_type="brain; liver; muscle" /dev_stage="Adult" /lat_lon="41.95 N 76.80 W" gene 1..6519 /gene="LOC101680004" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns" /db_xref="GeneID:101680004" CDS 395..2752 /gene="LOC101680004" /codon_start=1 /product="protein argonaute-4 isoform X3" /protein_id="XP_044920124.1" /db_xref="GeneID:101680004" /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQRGRQSCVRTEQWPGSSGLGQGSADPP"
misc_feature 470..859 /gene="LOC101680004" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 890..1042 /gene="LOC101680004" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1043..1405 /gene="LOC101680004" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1199..1201,1244..1246,1286..1288,1298..1300, 1352..1354,1373..1375,1379..1381) /gene="LOC101680004" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1544..2671 /gene="LOC101680004" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1955..1957,1967..1969,2003..2014,2021..2023, 2045..2047,2054..2056,2066..2068,2078..2080) /gene="LOC101680004" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" polyA_site 6519 /gene="LOC101680004" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtcccgccccccgccgggctccgctgaccgggcgcccggggacgcgcacgccccccctgcgagccgggaccctgcgccgcgcgagccccgtgccccctccccgcccggcgggcgcgcgcgctggctcccgctcccgctcccgctggcagcggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcgggagccgggtccctgtccccgggccgggcgccgccgccgccccctgcccagcgcccgcgtctccgcggcgccgccacccccagcgccaatattccggagatcaagcgttacgcggcggcggcggcggcggcggcggcggggcccggagcgggaggcaccggggaccggggcgaggcggcccccgccgccgccatggaggcgctgggaccgggacctccaaccagcctgtttcaaccacctcgtcgccctggccttggaactgttggaaaaccaattcgactattagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacgacctcggagagtcaacagagaggtagtagatacaatggtgcggcacttcaagatgcagatatttggtgaccggcaacctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggatagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtatcagttgtgagccttcagttgcttttagaagctttggctgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgttatcacaagacaccttccctcaatgaggtacactccggtgggtcgttcttttttctcacctcctgaaggttactaccaccctctgggagggggcagagaggtttggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgacgtgtcagcaactgctttctaccgggctcagcctatcatcgagttcatgtgtgaagttttagacattcagaacatcaatgaacagaccaaaccgctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcctttacagctagaaaatgggcaagctatggaatgtacagtagctcagtactttaagcagaagtatagtctgcagctgaaatacccccatcttccctgtctccaagtgggacaagaacaaaaacatacatatttgccacttgaggtttgtaatatcgtggcaggacagcgatgtataaagaagctcacagacaatcagacttctacaatgatcaaagctacagcaagatcggctcctgacagacaggaagaaatcagtagactggtgaagagtaacagcatggtgggtggaccggatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctcacaggcagggtacttccagcaccaatgctgcaatatggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccaactccgtaaaatctctaaggatgcgggaatgcccatccagggtcagccatgtttctgcaagtacgcacaaggtgcagacagtgtggagcccatgttcaaacacctgaaaatgacctatgtgggcctacagctaattgtggttatcttgcccgggaagacaccagtgtatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacagtgtgtccaggtaaaaaatgtagtgaagacctcaccgcagaccctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaatgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcagatgttacacaccccccggcgggggatgggaagaagccttccattgctgctgtcgttggcagtatggatggccaccccagccggtactgtgccaccgttcgggtgcagacctcccgccaggagatctcccaggagctcctctacagtcaggaggtaattcaggacctcactaacatggttcgagagctgctgatccagttctacaaatctacacgcttcaaacccactcggatcatctactaccgtggaggggtatcagagggacaaatgaaacaggtcgcctggccagagctaatagcaattcgtaaggcatgtattagcttggaagaagattaccggccaggaataacctacattgtagtgcagaagagacatcacacacgacttttctgtgcagataaaacagaaagggtggggaaaagtggcaatgtaccagcaggcaccacggtggacagcaccatcacacatccatccgagttcgacttttacctctgtagtcatgcaggaattcagcgcggaaggcagtcatgtgtcaggacagagcaatggccgggatcctcaggccttggccaaggcagtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccaactgggcaccccatgcagcctcaaaatgtttcaaatgcctaccgcctctagagagagccaagttgacttcaggtggtcttctacgagcagctcggaatagttgcactgaatctctacttcgcagcactgtctgatgcatcaacaaaattgagccattttttaaaagtaatagatactcatagattgtcttttctgatgcactggactgaatttttacctcatcttgcaaaggctgatcagcctgaacttccttaaggacttcacaagaaaggtttcgatggaatattttgctcgttgtggtgttcaccgcatccctctagtcttagaagatcactccttgttttctgtactcattgagtggggtgtctgcgtaagtgggagagaaaaaccaaacaatatgcttcagttcagcgttaactttttaattgtgtgggtccataaactttttaatggagatttctgacttcgccactgtaaatgcctttaacgagcattaatttttaaaagttttacagagttttattagttttcctactttatcttcttgatctctacagactcgtgctggtgcaagtacaggctgccaggcaattgcactatatttggctgcaaattcagaccagcagctctctgatttggttggcttttgtgaatgtgtagcacaaacagatgtaatccatgtcacagtgacagatgacactgccatggtaaaagtactcatgtttcccccttttggaaaaaaaaattagcttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatagtttttaaacttttctcatagaaaattaactttggcaataagcattttttaaggtcccttctcttcctcccccaactgtgtagttttctagatgagatttcggtatgattttatcagctatttcttatagatcataatgtggcaatttctgaaactggtcagaaaagacatatatttccatgactttttaaagaattatttttatctgttttatagtcaccattggtgtcctgtcactttgttttaaaataagctagagccaggatgcttccttatcggataggctttgccaatccttaaggtatattgagtgatgctgcgacctgcacagatgtaccagcatttaaaacttcttttcccgggaatcaaggttactcacacagtcatgtgcagtgcaaatttttgtgtttctctttcaatctgaaatgtacttggtggggtttccttcctttcactaaactaaaactgcatagaaaaggttgatttttcttaagagattctagatcccgctcacaaggagacaggttcctttcttgtccaaacaaggggagctgatctaaagcaagcgtcagagaaagtgtagggaaaaaacacattttgtatttagtgtagataacactttgtgaatggacaacagttacatagagtcttggtagttccagccagtgtttcccagcccagattttactgacatgtgattttctatcctggaacctcagaagtgagagctagggaagggggtagaatccccagagccacagtccctatggctgaggaaggtgctgagggaagagacagacacagtgtgggaaaacggttttgccccctctgcctggacactgctggtgggggaacactggatctgatggtgaagggtgtttgcttgaactcattagccggtccaaatctcttaaactagccttctcaaaatcccagcaatacaaagcactgttttttcttcagtcttttaaagaagcttgtaaatacattgaagtttacatttccatgtgctgttggtcagcggcgccacccgtctttgctgagactggtctctaagagttttataatgtatattgtgtcctgtagctcattaagatgactgcagacatccttattctctgcatatagtgggatgaaagcaagttctgtaattgaggcacaacaggcaggagtgaagagatggcagatgttaatttcttacgattttccttttctgcaaatacctcacttggatactacagatcaggacatgttggcgaggggctggctgctacttttattcacgcttgttcagggagagctcagaaaatacccttcagcatggccaccctggacccaagaggaagaaaaacggagcttctttaggagaaggaggactgagtggcgtccaggttgtgaagaactcttggtggctggctggctggccagcgggcaccacacctgcccttgagtgcctcgggctcacttgttaacgcacagaagtgtcacttctcatcatctcctggcacgtatggagcaggaagtgaggtggagtgccaggaagccctgattcgcttgccggcaattgggctatatgcttgaccttgaactatacagtttgtacaacctcagtcagtcctacacactggggcaaatcagcgtggtggtggaggaaaagccgggaggcctatttttataggaaacagtacctttaacgggggagcaaatgcactcattttggatgaaaggaaagaaatatggaagaactagcattattggggagagaaaaaaaacctgctaaagggggtgaatcttgaagcggtaatcactacagaatcagagttgcagcaatactgttacaagcaagtctgaatgcataatttgaatttggcttgacgatttgaataggatagccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtagatttaggctgtttgtttttttttaatgcagcctgtttaggcactgtcatgtggtgtgaaagattgaaatgtagcaatgctaaagagtaacaattaggggataaggagtagggacctcaggagagtggtgaagatccaaatgttgaaccaataacattttcttattgtcgttagctgttgaagcctgagtggtttctagagtgaactagctggctttgtgcagccagagtctgggcaggtagaacatattcattcttactgtaaattctatttgctgcttccaaagtgatgatttacaggttctatatggtctatactttaggatctggtgcccagcctatgtcagagcttccctacctggcttagctctctatccttccagtgggaaaaggcaacccctgtttaagaaggctcaccctctctaccctgcccttgtgaccctttgtggatgtgctataagattttcttgctcaatagcaaggtggtagctctgctttcattttaaggaagtggaggctgagggcattgtatcaatactgcttcaactccaaggatttttccttataaaattaaagggaagatcttattatcaattaaccattttcttatcccttgctattgacattcatgctctttctgtgtctagtggctgaaatgtttgcatttgttcatttgactaatggtgtaattttggtttctatattgttagacctgtaatgttttaaaaatgtattttattaactttggactggatgtatgtctttagcaatacgaggtactttctaaactattaagggaggggtggtatccccatgttgagataagatgatggttgtataaattttgcgattttttttttttttttggcctgcagggatattttgtgttcatgtgtccaaaagagaataaactggcattcttgtgccaaaagttgtt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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