GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 00:47:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045064189            6519 bp    mRNA    linear   MAM 09-NOV-2021
DEFINITION  PREDICTED: Mustela putorius furo argonaute RISC component 4
            (LOC101680004), transcript variant X3, mRNA.
ACCESSION   XM_045064189
VERSION     XM_045064189.1
DBLINK      BioProject: PRJNA776022
KEYWORDS    RefSeq.
SOURCE      Mustela putorius furo (domestic ferret)
  ORGANISM  Mustela putorius furo
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia;
            Musteloidea; Mustelidae; Mustelinae; Mustela.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_025422005.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mustela putorius furo Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6519
                     /organism="Mustela putorius furo"
                     /mol_type="mRNA"
                     /isolate="JIRA1106"
                     /sub_species="furo"
                     /db_xref="taxon:9669"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="brain; liver; muscle"
                     /dev_stage="Adult"
                     /lat_lon="41.95 N 76.80 W"
     gene            1..6519
                     /gene="LOC101680004"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 54 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101680004"
     CDS             395..2752
                     /gene="LOC101680004"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X3"
                     /protein_id="XP_044920124.1"
                     /db_xref="GeneID:101680004"
                     /translation="
MEALGPGPPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQRGRQSCVRTEQWPGSSGLGQGSADPP"
     misc_feature    470..859
                     /gene="LOC101680004"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    890..1042
                     /gene="LOC101680004"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1043..1405
                     /gene="LOC101680004"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1199..1201,1244..1246,1286..1288,1298..1300,
                     1352..1354,1373..1375,1379..1381)
                     /gene="LOC101680004"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1544..2671
                     /gene="LOC101680004"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1955..1957,1967..1969,2003..2014,2021..2023,
                     2045..2047,2054..2056,2066..2068,2078..2080)
                     /gene="LOC101680004"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     polyA_site      6519
                     /gene="LOC101680004"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gtcccgccccccgccgggctccgctgaccgggcgcccggggacgcgcacgccccccctgcgagccgggaccctgcgccgcgcgagccccgtgccccctccccgcccggcgggcgcgcgcgctggctcccgctcccgctcccgctggcagcggcggcggcggcggggattgtttttgttgtcgctgaggccggaagagccgcgggagccgggtccctgtccccgggccgggcgccgccgccgccccctgcccagcgcccgcgtctccgcggcgccgccacccccagcgccaatattccggagatcaagcgttacgcggcggcggcggcggcggcggcggcggggcccggagcgggaggcaccggggaccggggcgaggcggcccccgccgccgccatggaggcgctgggaccgggacctccaaccagcctgtttcaaccacctcgtcgccctggccttggaactgttggaaaaccaattcgactattagccaatcattttcaggttcagattcctaaaatagatgtgtatcactatgatgtggatattaaaccagaaaaacgacctcggagagtcaacagagaggtagtagatacaatggtgcggcacttcaagatgcagatatttggtgaccggcaacctggctatgatggcaaaagaaacatgtacacagcacatccactgccaattggacgggatagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtatcagttgtgagccttcagttgcttttagaagctttggctgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgttatcacaagacaccttccctcaatgaggtacactccggtgggtcgttcttttttctcacctcctgaaggttactaccaccctctgggagggggcagagaggtttggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgacgtgtcagcaactgctttctaccgggctcagcctatcatcgagttcatgtgtgaagttttagacattcagaacatcaatgaacagaccaaaccgctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacagatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcctttacagctagaaaatgggcaagctatggaatgtacagtagctcagtactttaagcagaagtatagtctgcagctgaaatacccccatcttccctgtctccaagtgggacaagaacaaaaacatacatatttgccacttgaggtttgtaatatcgtggcaggacagcgatgtataaagaagctcacagacaatcagacttctacaatgatcaaagctacagcaagatcggctcctgacagacaggaagaaatcagtagactggtgaagagtaacagcatggtgggtggaccggatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctcacaggcagggtacttccagcaccaatgctgcaatatggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccaactccgtaaaatctctaaggatgcgggaatgcccatccagggtcagccatgtttctgcaagtacgcacaaggtgcagacagtgtggagcccatgttcaaacacctgaaaatgacctatgtgggcctacagctaattgtggttatcttgcccgggaagacaccagtgtatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacagtgtgtccaggtaaaaaatgtagtgaagacctcaccgcagaccctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaatgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcagatgttacacaccccccggcgggggatgggaagaagccttccattgctgctgtcgttggcagtatggatggccaccccagccggtactgtgccaccgttcgggtgcagacctcccgccaggagatctcccaggagctcctctacagtcaggaggtaattcaggacctcactaacatggttcgagagctgctgatccagttctacaaatctacacgcttcaaacccactcggatcatctactaccgtggaggggtatcagagggacaaatgaaacaggtcgcctggccagagctaatagcaattcgtaaggcatgtattagcttggaagaagattaccggccaggaataacctacattgtagtgcagaagagacatcacacacgacttttctgtgcagataaaacagaaagggtggggaaaagtggcaatgtaccagcaggcaccacggtggacagcaccatcacacatccatccgagttcgacttttacctctgtagtcatgcaggaattcagcgcggaaggcagtcatgtgtcaggacagagcaatggccgggatcctcaggccttggccaaggcagtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccaactgggcaccccatgcagcctcaaaatgtttcaaatgcctaccgcctctagagagagccaagttgacttcaggtggtcttctacgagcagctcggaatagttgcactgaatctctacttcgcagcactgtctgatgcatcaacaaaattgagccattttttaaaagtaatagatactcatagattgtcttttctgatgcactggactgaatttttacctcatcttgcaaaggctgatcagcctgaacttccttaaggacttcacaagaaaggtttcgatggaatattttgctcgttgtggtgttcaccgcatccctctagtcttagaagatcactccttgttttctgtactcattgagtggggtgtctgcgtaagtgggagagaaaaaccaaacaatatgcttcagttcagcgttaactttttaattgtgtgggtccataaactttttaatggagatttctgacttcgccactgtaaatgcctttaacgagcattaatttttaaaagttttacagagttttattagttttcctactttatcttcttgatctctacagactcgtgctggtgcaagtacaggctgccaggcaattgcactatatttggctgcaaattcagaccagcagctctctgatttggttggcttttgtgaatgtgtagcacaaacagatgtaatccatgtcacagtgacagatgacactgccatggtaaaagtactcatgtttcccccttttggaaaaaaaaattagcttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatagtttttaaacttttctcatagaaaattaactttggcaataagcattttttaaggtcccttctcttcctcccccaactgtgtagttttctagatgagatttcggtatgattttatcagctatttcttatagatcataatgtggcaatttctgaaactggtcagaaaagacatatatttccatgactttttaaagaattatttttatctgttttatagtcaccattggtgtcctgtcactttgttttaaaataagctagagccaggatgcttccttatcggataggctttgccaatccttaaggtatattgagtgatgctgcgacctgcacagatgtaccagcatttaaaacttcttttcccgggaatcaaggttactcacacagtcatgtgcagtgcaaatttttgtgtttctctttcaatctgaaatgtacttggtggggtttccttcctttcactaaactaaaactgcatagaaaaggttgatttttcttaagagattctagatcccgctcacaaggagacaggttcctttcttgtccaaacaaggggagctgatctaaagcaagcgtcagagaaagtgtagggaaaaaacacattttgtatttagtgtagataacactttgtgaatggacaacagttacatagagtcttggtagttccagccagtgtttcccagcccagattttactgacatgtgattttctatcctggaacctcagaagtgagagctagggaagggggtagaatccccagagccacagtccctatggctgaggaaggtgctgagggaagagacagacacagtgtgggaaaacggttttgccccctctgcctggacactgctggtgggggaacactggatctgatggtgaagggtgtttgcttgaactcattagccggtccaaatctcttaaactagccttctcaaaatcccagcaatacaaagcactgttttttcttcagtcttttaaagaagcttgtaaatacattgaagtttacatttccatgtgctgttggtcagcggcgccacccgtctttgctgagactggtctctaagagttttataatgtatattgtgtcctgtagctcattaagatgactgcagacatccttattctctgcatatagtgggatgaaagcaagttctgtaattgaggcacaacaggcaggagtgaagagatggcagatgttaatttcttacgattttccttttctgcaaatacctcacttggatactacagatcaggacatgttggcgaggggctggctgctacttttattcacgcttgttcagggagagctcagaaaatacccttcagcatggccaccctggacccaagaggaagaaaaacggagcttctttaggagaaggaggactgagtggcgtccaggttgtgaagaactcttggtggctggctggctggccagcgggcaccacacctgcccttgagtgcctcgggctcacttgttaacgcacagaagtgtcacttctcatcatctcctggcacgtatggagcaggaagtgaggtggagtgccaggaagccctgattcgcttgccggcaattgggctatatgcttgaccttgaactatacagtttgtacaacctcagtcagtcctacacactggggcaaatcagcgtggtggtggaggaaaagccgggaggcctatttttataggaaacagtacctttaacgggggagcaaatgcactcattttggatgaaaggaaagaaatatggaagaactagcattattggggagagaaaaaaaacctgctaaagggggtgaatcttgaagcggtaatcactacagaatcagagttgcagcaatactgttacaagcaagtctgaatgcataatttgaatttggcttgacgatttgaataggatagccccttgggactgactgaatcgttatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtagatttaggctgtttgtttttttttaatgcagcctgtttaggcactgtcatgtggtgtgaaagattgaaatgtagcaatgctaaagagtaacaattaggggataaggagtagggacctcaggagagtggtgaagatccaaatgttgaaccaataacattttcttattgtcgttagctgttgaagcctgagtggtttctagagtgaactagctggctttgtgcagccagagtctgggcaggtagaacatattcattcttactgtaaattctatttgctgcttccaaagtgatgatttacaggttctatatggtctatactttaggatctggtgcccagcctatgtcagagcttccctacctggcttagctctctatccttccagtgggaaaaggcaacccctgtttaagaaggctcaccctctctaccctgcccttgtgaccctttgtggatgtgctataagattttcttgctcaatagcaaggtggtagctctgctttcattttaaggaagtggaggctgagggcattgtatcaatactgcttcaactccaaggatttttccttataaaattaaagggaagatcttattatcaattaaccattttcttatcccttgctattgacattcatgctctttctgtgtctagtggctgaaatgtttgcatttgttcatttgactaatggtgtaattttggtttctatattgttagacctgtaatgttttaaaaatgtattttattaactttggactggatgtatgtctttagcaatacgaggtactttctaaactattaagggaggggtggtatccccatgttgagataagatgatggttgtataaattttgcgattttttttttttttttggcctgcagggatattttgtgttcatgtgtccaaaagagaataaactggcattcttgtgccaaaagttgtt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]