2024-03-29 14:52:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045035544 10109 bp mRNA linear MAM 09-NOV-2021 DEFINITION PREDICTED: Felis catus argonaute RISC catalytic component 3 (AGO3), transcript variant X9, mRNA. ACCESSION XM_045035544 VERSION XM_045035544.1 DBLINK BioProject: PRJNA773801 KEYWORDS RefSeq. SOURCE Felis catus (domestic cat) ORGANISM Felis catus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058375.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Felis catus Annotation Release 105 Annotation Version :: 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10109 /organism="Felis catus" /mol_type="mRNA" /isolate="Fca126" /db_xref="taxon:9685" /chromosome="C1" /sex="female" /cell_type="Fibroblast" /tissue_type="Fibroblast" /dev_stage="adult" gene 1..10109 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns" /db_xref="GeneID:101087079" /db_xref="VGNC:VGNC:107484" CDS 131..2011 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X6" /protein_id="XP_044891479.1" /db_xref="GeneID:101087079" /db_xref="VGNC:VGNC:107484" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 131..472 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(266..268,311..313,353..355,365..367,419..421, 440..442,446..448) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 605..1882 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1016..1018,1028..1030,1064..1075,1082..1084, 1106..1108,1115..1117,1127..1129,1139..1141) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1220..1222,1226..1228,1436..1438,1850..1852) /gene="AGO3" /note="active site" /db_xref="CDD:240015" polyA_site 10109 /gene="AGO3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
cctctggcagcagtgtggagaatagatagaggagaaaaaactaatctcaggagccagttaggaggctttttcaatccctagttcagtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatattgtggccgggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggagattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtactcccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccatacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatattgaagggtttcacagaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcggacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcttgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggctacgcagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcttccatggttcgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggacgataactgctttactgcagatgaacttcagctgctgacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagataccatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgaaagatgcatcgacagagcgtatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttaatataaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtacagaaaaagtaaatgacggtttaaaaaaaaaacacacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtgaaaggtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacactgacagtagatatatatgtgtctgtgtgtgtattttatagttcattccatcgggaaactttctttcccttttatcatcctcccaccaccactttgatttctctctacctccctcgccttcatcacctacatttttttttcctgatgctaccagtgacattcagatgttcatgtatctggttcatttggatatgaagcatggcaaactagagttttatttttattttgcacaccctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatattgctttcttaaacaaaattattatatatatacacacacatgtatatgtatgtatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatacgtatatatatatgaagtttctatgagagtgtctgcccactcctgctctgaacttaacatttgccatttgtgcaatgtgtatataagcagtagcaatcttaaactattatttttctttagtttgttaaagctgctataaatataaaactttgtcagaagttgtaactcagaaatttctctataactgatatgtattctaaagccttctgttgctatgggttatacatgaaaatcccttacagctttcataaagggcaaatattttaaatgattgaaactcttgagggttgaggcctctgaaattgggtggagagagagaaggggttgctgagggttttttttttattttaatttttttttttttgctagtttacttgttgcctctcataccttaatgtgattttcatatatatatatatatatatatatatatatatatatatatatacacatacatatatatggttatatatatgtatgtatatatatatatatacacatatatgtatgttttgaagtacagcttccttttatatttattaggatagtgctttaataattagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaacttgttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatttctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagaatgtcttttaaaaatcctaatgaaaatgaaggaagttaaatttcctaaatgagtctgatcttaaatattagagatagagttgaactttgatttaagaaatgacagtgaataggggcttagttggtggagcatgtaacttttgatctcaggatcatgagttcaagtgccacttcaggtgtggagcctactttttaaaaaatgacagtgaataacttaagatttagaagacatttaatattttgaaaatagatcatgtttattgaacaatcatactggttaggtgcccattttcatttactaaaattaattaggaaaatgtaaaatgatatttttaaaacattttttgccaatttatcaccagtgtaactttccttttaaaattagggttatggtggcaaaggaggttaggactgatcattttaaatgagttaaatcactgaaatatggaaaaggttttacaaaacttctgttttattgattttgttttaaggtattgaaaatattatagagctgtcaaaatcaagttcatcagtaacattggagtcaggggagcttagcactttgtaactcatgaaaattgcattttaattttttttttttttttttttttgcactggttcagagtgtagatactacagattgtttccagtgggcattttaaacctttcagaattccatctgcacatgatatcaaatggattagctctttagtttctctcttacctgtaatccactcttattgccaatttactgtattttgagcctataatctgagcccgtgtcctccaacaggtatgaaatattttgttcctctgccagaaaactaagaaagtactgtattttgtatgtttattattactgaagtgtctgaaatgcaatttacaacaacactgtttcaaagctctttacatgaagtaatatttgtatagtatatacatttttttctcccaaccctgcccctctcctccaaaaatttcctataaagcatgtatttttttttttttacattaaaatttcactgaatatagtcaggaacatgaacaagagaagaaaatagtttatccttgattgttatatgcttgctcagtatgagtaaaacaccttcctttacaatgggagctacacagacatgtgggaaactatagggcccagggaagaactataagataccatttgcctatttagtgcttcacttcattttcagttgcttagttttccatgtggtagaatgaaacccgtaatttaaatctatttggaaggacttttactgaggaaaaacaaaaaaca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actattctaagctacttccttcacccccacatcaggtattaattgaagactggtactctgattataggaatttgttgctactaaataaaaattaaatatgtttcaagca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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