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2024-03-29 14:52:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045035544           10109 bp    mRNA    linear   MAM 09-NOV-2021
DEFINITION  PREDICTED: Felis catus argonaute RISC catalytic component 3 (AGO3),
            transcript variant X9, mRNA.
ACCESSION   XM_045035544
VERSION     XM_045035544.1
DBLINK      BioProject: PRJNA773801
KEYWORDS    RefSeq.
SOURCE      Felis catus (domestic cat)
  ORGANISM  Felis catus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
            Felinae; Felis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_058375.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Felis catus Annotation Release 105
            Annotation Version          :: 105
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10109
                     /organism="Felis catus"
                     /mol_type="mRNA"
                     /isolate="Fca126"
                     /db_xref="taxon:9685"
                     /chromosome="C1"
                     /sex="female"
                     /cell_type="Fibroblast"
                     /tissue_type="Fibroblast"
                     /dev_stage="adult"
     gene            1..10109
                     /gene="AGO3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101087079"
                     /db_xref="VGNC:VGNC:107484"
     CDS             131..2011
                     /gene="AGO3"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X6"
                     /protein_id="XP_044891479.1"
                     /db_xref="GeneID:101087079"
                     /db_xref="VGNC:VGNC:107484"
                     /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
     misc_feature    131..472
                     /gene="AGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(266..268,311..313,353..355,365..367,419..421,
                     440..442,446..448)
                     /gene="AGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    605..1882
                     /gene="AGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1016..1018,1028..1030,1064..1075,1082..1084,
                     1106..1108,1115..1117,1127..1129,1139..1141)
                     /gene="AGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1220..1222,1226..1228,1436..1438,1850..1852)
                     /gene="AGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      10109
                     /gene="AGO3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
cctctggcagcagtgtggagaatagatagaggagaaaaaactaatctcaggagccagttaggaggctttttcaatccctagttcagtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatattgtggccgggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggagattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtactcccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccatacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatattgaagggtttcacagaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcggacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcttgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggctacgcagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcttccatggttcgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggacgataactgctttactgcagatgaacttcagctgctgacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagataccatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgaaagatgcatcgacagagcgtatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttaatataaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtacagaaaaagtaaatgacggtttaaaaaaaaaacacacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtgaaaggtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacactgacagtagatatatatgtgtctgtgtgtgtattttatagttcattccatcgggaaactttctttcccttttatcatcctcccaccaccactttgatttctctctacctccctcgccttcatcacctacatttttttttcctgatgctaccagtgacattcagatgttcatgtatctggttcatttggatatgaagcatggcaaactagagttttatttttattttgcacaccctactcctgtctcttgtctcatacacaattctaagtcctcaactcttgatattgctttcttaaacaaaattattatatatatacacacacatgtatatgtatgtatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatacgtatatatatatgaagtttctatgagagtgtctgcccactcctgctctgaacttaacatttgccatttgtgcaatgtgtatataagcagtagcaatcttaaactattatttttctttagtttgttaaagctgctataaatataaaactttgtcagaagttgtaactcagaaatttctctataactgatatgtattctaaagccttctgttgctatgggttatacatgaaaatcccttacagctttcataaagggcaaatattttaaatgattgaaactcttgagggttgaggcctctgaaattgggtggagagagagaaggggttgctgagggttttttttttattttaatttttttttttttgctagtttacttgttgcctctcataccttaatgtgattttcatatatatatatatatatatatatatatatatatatatatatacacatacatatatatggttatatatatgtatgtatatatatatatatacacatatatgtatgttttgaagtacagcttccttttatatttattaggatagtgctttaataattagagaactgtattggcaacatcttttatagaaatgtaatcatgtttattttaagaactgacaacttgttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatttctttaccacagatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagaatgtcttttaaaaatcctaatgaaaatgaaggaagttaaatttcctaaatgagtctgatcttaaatattagagatagagttgaactttgatttaagaaatgacagtgaataggggcttagttggtggagcatgtaacttttgatctcaggatcatgagttcaagtgccacttcaggtgtggagcctactttttaaaaaatgacagtgaataacttaagatttagaagacatttaatattttgaaaatagatcatgtttattgaacaatcatactggttaggtgcccattttcatttactaaaattaattaggaaaatgtaaaatgatatttttaaaacattttttgccaatttatcaccagtgtaactttccttttaaaattagggttatggtggcaaaggaggttaggactgatcattttaaatgagttaaatcactgaaatatggaaaaggttttacaaaacttctgttttattgattttgttttaaggtattgaaaatattatagagctgtcaaaatcaagttcatcagtaacattggagtcaggggagcttagcactttgtaactcatgaaaattgcattttaattttttttttttttttttttttgcactggttcagagtgtagatactacagattgtttccagtgggcattttaaacctttcagaattccatctgcacatgatatcaaatggattagctctttagtttctctcttacctgtaatccactcttattgccaatttactgtattttgagcctataatctgagcccgtgtcctccaacaggtatgaaatattttgttcctctgccagaaaactaagaaagtactgtattttgtatgtttattattactgaagtgtctgaaatgcaatttacaacaacactgtttcaaagctctttacatgaagtaatatttgtatagtatatacatttttttctcccaaccctgcccctctcctccaaaaatttcctataaagcatgtatttttttttttttacattaaaatttcactgaatatagtcaggaacatgaacaagagaagaaaatagtttatccttgattgttatatgcttgctcagtatgagtaaaacaccttcctttacaatgggagctacacagacatgtgggaaactatagggcccagggaagaactataagataccatttgcctatttagtgcttcacttcattttcagttgcttagttttccatgtggtagaatgaaacccgtaatttaaatctatttggaaggacttttactgaggaaaaacaaaaaacaaaaacgttttttaatataaagctttacctttgaagtgagttcttttttagggtttctttcttacagtttcaacattgctagtttaaggttggttaacttgaaagaatatgtatagtatatttctattttgcttactaacaaattggtatatcaaacttaattaaaaggaaccttgtgcttagaattttaagataaaagactaagtggcaaatactttttgaaatttgttttaattattattgcactctggtgtagaattcctgatctttttttatttaaaaaaaaaaaaaaaagagattgttttgaatttaaaggtcatgaaactcaacaatgacctttctgttcctgcctttgctcactaaactgtataatgaatgctaaattttggtctgctgttttctatgatgcataagatttactttaaaatgtcagtcccagccactggtataattgattttcatatgaagaagagttgggagtttaatgtatattctggatggcaaatgtgtctgggtaaagtgctgatacatgttatgacagtatcaggttactggcattgaggaccatacatttataatactatagctgctatatttatttaattaagtagagtctgacatttactgcactaaacaataaggagatgagcaggattggaggctagtgttaagacacacacccttttttcctaaataagattaagaacatgaaataataaggtaacaaagggtgctgccattttagtttcaatttaatatcaggatacgctttgttttagaaatgcagattttaactttagctgttttgcaaaagggtacctcaacctcctcagtactggtttttggcatattttcacagaagtacagctgccctttattttttcttaatattttaccttttaacaagtttctcagaaaaaaaaaaaaaagttcttatatggaaatctacctgtttgtaatccattaatttatttctctttctagaagagtctagaagggattctagtaggaatgtaccgggtgttttggaaggcactagataaagattcatctctactgtctagaatagggactcctagccttctaaagacctatactagttttccaaactaggttctttgatgacccaccactgcctaatgtttacttgtatattctgtaatggattttagtatgacagactgcatgacagacttagtcctgacagacttaaaggaaataaaatctgagttgccattcagtagaaatggctggcagagatctcagtgtttaaggaagaggtgaacaagcagagtggcagtaatagatctgaagcaattagatggattatataggccaggaattagaaactgttggtaaaggaagttgatgagtgttttcagaggctaacatatatttgccaagggtggtgatttttatgaaatccttgaatctagccacttggattcagcttagaatattttgtagtcctgctttttcaaacttgatagaaatattttgccaaaaagcttaactgaaaactctgtataatttttattcaggatcgttaaacctgagttaaatatttggttaaatctctcttagatgttctcctattgagtatttttaaaaaaaacaggttgttcctatcagtaacttcctacttaaattaccttttaggagttatcagtcaagctgcaaaaagacatcattggcttggcatctttattttgccttttttatccatacagagttttaatcctttgcattctttttgagaattcttagatgtcttaaagcttcaataataatagttgggaggctttatagatacagatatggatagatcaagtgaggcttccctgagtggtggtataaccctgactctaaagtctgtctttattttcttattcccctcccatttgatcatataaagcactttcgtgattctataggagtcaaaaataagccaagaattgatgtgtaaaattagtacagaaatgtgaaagtaagggttttctccagaaaatcttttttaaaaaattcctgcttatactaagaacattcttgatcaatgactgttagaaataccatgattagtaaaatgtaagctgactctcaggaggaaaaaaaatctctctctctccctctcttcctccccaccatatatatctcaaagggaaaaaaatattttttgactttttcctgcttttaaaaatggtacatttcagtttataattttccctgtcggtcaaaataatttttttttttttaactaacataatggtcaaagcttgtgctagtattacctactgctagttgaattttatttttctttacccagcaaagatagtactctagatttttacattgtacattaaacctcaagaatctaatgctcttaaagtatggagaagctaaagattttaatttggattgaagatagaaaaataataactttaatatggaaggttgagatttaccaatagcaaaccctgttgaagtatcagataacaaagagtgtgacaaaattaagatcctattaattaatctgtccacccattggtctcccttcctttttgaaatcaatgtctgaagcaaccaaaacctaatgttgtatctatgttagtgtctcagtaaagcaaagatgtcttcagggtagatgctgagttaaattgttaaatctttttttaaagcaaggcggttcttagaaagtgccttttcagaagatggtgctgtagatttttatttttcaaatagcacgagactaaaaatttaaaaggtaaattattttagaactccaagagtgtgacagtttcatataaataatgttattcgttgtcctgaatctggtccaaggaaccaagtaaaggtttcattcagtaaaatatctaggtaaatgctcaccaaatgtattttgcaagtttgaaaaataaatttttaatagaattaaccctttcagttctcagctgtgttgaaggtaatatgaatctgtaaggtgcataaaacagcaaatctgctaaactttttaacaagagtatgggtatagtaacaagtgcccaaagggaaaggtaacttgccagggaactatatgtcatagctacttttttttttttttttctgtatagattgacccttctgtaaatatcttttggcatccttttctaattaatatttgttaaagaagactgcttatatataaaggagagccaagtcatcatggaaattagtttaagagaaaaagtaagtgactataactctaactttaggaaaattttcttttttaggcaccaagaaatatatgattccctcttttttctaccatggggcaactatgaaatatgatgatagtgcatctaaaagggcatgaccagttaattagaaacgcaacatgaaaaattgggctttggaggaaataagcaaaatgaaccattcatacttactagaaacatagtaatctaccagaaagcagttttcccctgggctttttactctcctagtagacaacagtaaatgatcacctaaccagttcttgcttgtgaatttggtgagcatttctccagaaaagaattgacgtaaaacaaaaaacaccacacctcagtaaccttgtatgctgcattatgtaacaatgatagtaagattatatcgattgtttggagtgtactgtgtctgtttgcaaatatacatgcacattaaactttttcattttttataatgtcttaatagcaattatgagtttatttttttagtattaatttttctattgtgatgtttatatttattggcaacttgtgtgcaacttttatattttgcttagatgttggttttaaggtattttatttttatagatatttctagcttttcctctttctttgtgatattagcaaagattaagatggaatgttaatataccaaccaaaactactaattccataaagtctagaatttggatttttaccaataaaccattaacactattttctaacttagaatatttaatgttgtttatatagtgggcattaaagacagtctttagatttctaaatgtggagggggaggtggggcttttctgtgagttagatttctttcccttaggtagcaaactaacactaacagattggatttattttacctgatctgccatttgggggcaacttgtcaattaaatgattgttacgtttctttttttacctttaactacattgaaattaatttaaatggtcacatcacccagcattaggattatgatatatttataagcctgggaagcaaataacaagtgatccagaagtcattgataattgactctgaagtgagatttccttccccacccccataattatattctatgaaagatatgctaccttgatcttttccctagcatactttcaaagctgattcaacccgaacatcagtgaagaaacagaatttaagtggctaggtagaaaagtgatagcagcagagtaatacaaaatttcagttaattaaaaatctaaaaagagcttatgaatgcaaattaattggaaggcagtgaaaagtatttattataggatattaatttcaaacagttatgctcactccagtttcctagtaaatagatcaaggttatttgttttagcacactaactttttacaaaaccgtgtgaaaagagtgaattctcttaagcaagtaaagtacttccatagtatttttacactgtgaatttgtgtggtaagccatttttctgtaggtaaaaagtaaactttatcccatcctctgagaatttaaaactcaaattttaaatttaaaattatcagggcttagtgtatgacattttgctgtactgtaatctgttctttccactgagggaataagtgagaaagtttcaagtaattataattggggaaatgttatttttatattatgtaaaatttcacgatttaaagtgaatcagcatgtaatttcatagagacattagtcgtatcactttttctgcattttttgccagttacagtagtgttgttgtttttttttaattatgaactattctaagctacttccttcacccccacatcaggtattaattgaagactggtactctgattataggaatttgttgctactaaataaaaattaaatatgtttcaagca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]