2024-04-25 20:46:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_044914477 3809 bp mRNA linear MAM 03-NOV-2021 DEFINITION PREDICTED: Neomonachus schauinslandi protein argonaute-1 (LOC110575417), transcript variant X1, mRNA. ACCESSION XM_044914477 VERSION XM_044914477.1 DBLINK BioProject: PRJNA392091 KEYWORDS RefSeq. SOURCE Neomonachus schauinslandi (Hawaiian monk seal) ORGANISM Neomonachus schauinslandi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058406.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neomonachus schauinslandi Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3809 /organism="Neomonachus schauinslandi" /mol_type="mRNA" /db_xref="taxon:29088" /chromosome="4" /sex="male" /tissue_type="blood" /country="USA: Kuai'i, HI" /collection_date="2015-01-12" /collected_by="NOAA" gene 1..3809 /gene="LOC110575417" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 1 EST, 26 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:110575417" CDS 1..2574 /gene="LOC110575417" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_044770412.1" /db_xref="GeneID:110575417" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKSLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 100..492 /gene="LOC110575417" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 520..672 /gene="LOC110575417" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 673..1035 /gene="LOC110575417" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(829..831,874..876,916..918,928..930,982..984, 1003..1005,1009..1011) /gene="LOC110575417" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1168..2445 /gene="LOC110575417" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1579..1581,1591..1593,1627..1638,1645..1647, 1669..1671,1678..1680,1690..1692,1702..1704) /gene="LOC110575417" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1783..1785,1789..1791,1999..2001,2413..2415) /gene="LOC110575417" /note="active site" /db_xref="CDD:240015" polyA_site 3809 /gene="LOC110575417" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagctcctggccaattactttgaggtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagctattgttagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccttggagtccgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcacagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagtccctcacagactctcagcgtgtgcgtttcaccaaggagatcaaaggcctaaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccttagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctataatctagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacggggcgagtgctgccggcccccatcttgcagtacggcggccggaaccgggccattgccacacctaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacgctcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaatctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagttccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtagtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgagtgcagcgaccccggcaggagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtctacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgttggccatccgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatatcgtggtgcagaaacgccatcatacgcgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacatcacccacccatttgagttcgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacgcgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggagggagggtagggaggagttcagaaggccttgtttccttctacaaagggggctttaaaagggtggggaacagggccagtaagccagaccaccagccagaagtctctgatgtccacctcatgacccccacccctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcatgtgacttgcagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccacggacaaaagctggtaggtttgggtttgataatttagatgggagagtgaggggcttgagaaagtgggtgggaggaaggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacgaaaccagacccagatcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatgattttggttgctcctcccccagctgccacccccctttcccttattcctttctctccaccttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatacccctaacccaacaagcctccagccagagcgccagctattttgcattcaaaggaattgacttccatattcattgagcttttaaaaaagatcacaacctcaagatggttaaagtccattgacatttgcactttcagacatgatgtcttggagctgctgagatgactggcccctggcctttccacttaacgcctccttttctccctgtccccccaagcctccccacctgcctgggtctggagttactttcatagcatttctcattcttggcttcttttttcccctgatggtcaagtcgcttatgtttcaatatttcttaactggggtgtcttataacaaatgatcttaagtctaaaataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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