2024-03-29 11:05:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_044770337 6946 bp mRNA linear MAM 26-OCT-2021 DEFINITION PREDICTED: Equus asinus protein argonaute-1 (LOC106830533), transcript variant X4, mRNA. ACCESSION XM_044770337 VERSION XM_044770337.1 DBLINK BioProject: PRJNA688408 KEYWORDS RefSeq. SOURCE Equus asinus (ass) ORGANISM Equus asinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052181.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Equus asinus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6946 /organism="Equus asinus" /mol_type="mRNA" /db_xref="taxon:9793" /chromosome="5" /sex="male" /tissue_type="blood" /breed="Dezhou" gene 1..6946 /gene="LOC106830533" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns" /db_xref="GeneID:106830533" CDS 166..2295 /gene="LOC106830533" /codon_start=1 /product="protein argonaute-1 isoform X4" /protein_id="XP_044626272.1" /db_xref="GeneID:106830533" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 232..384 /gene="LOC106830533" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 385..747 /gene="LOC106830533" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(541..543,586..588,628..630,640..642,694..696, 715..717,721..723) /gene="LOC106830533" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 880..2166 /gene="LOC106830533" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1300..1302,1312..1314,1348..1359,1366..1368, 1390..1392,1399..1401,1411..1413,1423..1425) /gene="LOC106830533" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1504..1506,1510..1512,1720..1722,2134..2136) /gene="LOC106830533" /note="active site" /db_xref="CDD:240015" polyA_site 6946 /gene="LOC106830533" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccctggagtctgtacaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggctcagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacatttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacattcaggaatttgggatcaaagtaaaggatgacatgacggaggtgacgggacgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacaccaaatcagggtgtctgggacatgcgagggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcaactcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaacgtggtgaagacctcgcctcagactctgtccaacctctgcctgaagattaatgttaaacttggtggcataaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatcttcctgggagcagatgttacacaccctccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggttcagcgaccacggcaagagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaaacctacccgcatcatcttctaccgagatggggttcctgaaggccagcttccccagatcctccactatgagttgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccggcttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggcgaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgctgcccaaatccagaagaagcagggagggaggtggggtatggagagtgcagaaggccttgtttccttctacagagggggcaaaagggtagggaacagggccagtaagacagaccaccagccagaagtctctgatatccacctcatacccccctactcctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcaccggtgcccaccatatacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggttggctctgcagccctacggacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgcgaaagtgggtgggaggagggaaggatttttttaggagccttaatcagaaaaggtctagatttgtttaaggagagaaacgaaaccagacccagatcaatattttaggatactagatgttttaatgggttgagaatccagtttgtaggaagatttttaatgctaatggttttggttgctcctcccccagctgccactcccccccttcccttattccaccttttctaccccactttacacctgctccctgatggacatccagccctagtaagacttaaggcactatggcacttagctctgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatatccctaacccaacaagcctccagccagagcgccagccattttgcatttgaaggaattgacttccatattcattgagcttttaaaaagataacaacctcaagatggttaaaatccattgacctttgcactttcagacgtgatgagtcctggagctgctgagatgactggcccctggcctttcaacttatgcctccctttctccctgtcctccctacctccccacctgcctgggtctggagttattttcataacatttctcactcttggcttcttttttcccctgatggtcaagtctcttatgtttcaatatttcttaactggggtgtcttataacaaatgatccttaggtctaaaataagaaaaaagaacaaaagctaatgttatttttataccataacttgagtgtattgccaaaatctggaaatccctcccatgcccaatgagtttacatcccagaaacattgagccatcagaaggaactatgtatgtgacttgttctttggcctggctaggtaggaggtggttatctccccaaggtggggctcaggctccatccttcctctgtgcagataatacctttttcttgctacaaactccctcacctgcactgccctgcactcttgcactcttcctgcaagtgcatcttcccttcctctggactgtcctctgacactttggctcatcagagattccagcatgtcctttggacaggctggggggattttgctgctctctgttgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtagcatgggcgttttttttttttttttttaaatctccctggatagagatggggtttggctgtcttgcagaactggaaaagtagggggttctagcttggtgcctgctggccttgaggcaaggccccctctttccttgaccgtttattttttcctgtcccactgcttgggatgaggagttgcagcttcagtgcagaaattcctctttttgaggaacctgggcttgggtttgccccagtctgatgatgaagccatgacactttagacctagctcaggcttggaggccagccggaggaaggccggtctgaatctgggcttgtgcagttagaggtaccatttcccctccccagcagcccttgtacagacccaaatttgctatgcaaaacagtctatcccaggttctgttctgattggctactttgttcagcgacttcacaaaacgtagcacaaacattgattatagagaaggcatcaggactgttgagtaactcctcctttacttctttcctactggctacagcgtggggtgccccatgggcacagcccagctgcagagcagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggatgggagctctcttggaacaatgggctctgcatgttctcttcttgggtgcattttggggctgggatcagggcactatttctggagggtccagtcgttcaccagcatttgcaaatgtccatagggagctggtagtagccccctactctcagcaacaagtttgtgttctctcctttttctctctttgcctcactctctccagttgggttttgagctggggcttgaaatgcattttttagccctttggcattgcacatgccattcaagaaataaaagcaagagaagcagcttgggcaatggcaagaaaatgacttcttactctgctttttctttttagtcattgagact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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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