GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 11:05:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_044770337            6946 bp    mRNA    linear   MAM 26-OCT-2021
DEFINITION  PREDICTED: Equus asinus protein argonaute-1 (LOC106830533),
            transcript variant X4, mRNA.
ACCESSION   XM_044770337
VERSION     XM_044770337.1
DBLINK      BioProject: PRJNA688408
KEYWORDS    RefSeq.
SOURCE      Equus asinus (ass)
  ORGANISM  Equus asinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052181.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Equus asinus Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6946
                     /organism="Equus asinus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9793"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="blood"
                     /breed="Dezhou"
     gene            1..6946
                     /gene="LOC106830533"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 EST, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 23 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:106830533"
     CDS             166..2295
                     /gene="LOC106830533"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X4"
                     /protein_id="XP_044626272.1"
                     /db_xref="GeneID:106830533"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    232..384
                     /gene="LOC106830533"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    385..747
                     /gene="LOC106830533"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(541..543,586..588,628..630,640..642,694..696,
                     715..717,721..723)
                     /gene="LOC106830533"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    880..2166
                     /gene="LOC106830533"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1300..1302,1312..1314,1348..1359,1366..1368,
                     1390..1392,1399..1401,1411..1413,1423..1425)
                     /gene="LOC106830533"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1504..1506,1510..1512,1720..1722,2134..2136)
                     /gene="LOC106830533"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      6946
                     /gene="LOC106830533"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccctggtcagtggccagatccctgttcccctggagtctgtacaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggctcagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacatttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacattcaggaatttgggatcaaagtaaaggatgacatgacggaggtgacgggacgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacaccaaatcagggtgtctgggacatgcgagggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcaactcattatcgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaacgtggtgaagacctcgcctcagactctgtccaacctctgcctgaagattaatgttaaacttggtggcataaacaacatcctagtcccacaccagcgctctgctgtctttcaacagccagtgatcttcctgggagcagatgttacacaccctccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggttcagcgaccacggcaagagatcattgaagacttatcctacatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaaacctacccgcatcatcttctaccgagatggggttcctgaaggccagcttccccagatcctccactatgagttgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccggcttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggatgagctccagatcttgacgtaccagctgtgccacacttatgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcttggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggcgaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaagagctgtgctgcccaaatccagaagaagcagggagggaggtggggtatggagagtgcagaaggccttgtttccttctacagagggggcaaaagggtagggaacagggccagtaagacagaccaccagccagaagtctctgatatccacctcatacccccctactcctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcaccggtgcccaccatatacacaggtgtctcatgtgactcacagtgctaaagactcatgcctgacagcttggtaaggttggctctgcagccctacggacaaaagctggtaggtttgggtttgatactttagatgggaaagtgaggggcttgcgaaagtgggtgggaggagggaaggatttttttaggagccttaatcagaaaaggtctagatttgtttaaggagagaaacgaaaccagacccagatcaatattttaggatactagatgttttaatgggttgagaatccagtttgtaggaagatttttaatgctaatggttttggttgctcctcccccagctgccactcccccccttcccttattccaccttttctaccccactttacacctgctccctgatggacatccagccctagtaagacttaaggcactatggcacttagctctgaagtgacatgaccctgtcttccttccgcctgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggggatggggtgggggtgggagaggaggtaggtggggaagaaatatccctaacccaacaagcctccagccagagcgccagccattttgcatttgaaggaattgacttccatattcattgagcttttaaaaagataacaacctcaagatggttaaaatccattgacctttgcactttcagacgtgatgagtcctggagctgctgagatgactggcccctggcctttcaacttatgcctccctttctccctgtcctccctacctccccacctgcctgggtctggagttattttcataacatttctcactcttggcttcttttttcccctgatggtcaagtctcttatgtttcaatatttcttaactggggtgtcttataacaaatgatccttaggtctaaaataagaaaaaagaacaaaagctaatgttatttttataccataacttgagtgtattgccaaaatctggaaatccctcccatgcccaatgagtttacatcccagaaacattgagccatcagaaggaactatgtatgtgacttgttctttggcctggctaggtaggaggtggttatctccccaaggtggggctcaggctccatccttcctctgtgcagataatacctttttcttgctacaaactccctcacctgcactgccctgcactcttgcactcttcctgcaagtgcatcttcccttcctctggactgtcctctgacactttggctcatcagagattccagcatgtcctttggacaggctggggggattttgctgctctctgttgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtagcatgggcgttttttttttttttttttaaatctccctggatagagatggggtttggctgtcttgcagaactggaaaagtagggggttctagcttggtgcctgctggccttgaggcaaggccccctctttccttgaccgtttattttttcctgtcccactgcttgggatgaggagttgcagcttcagtgcagaaattcctctttttgaggaacctgggcttgggtttgccccagtctgatgatgaagccatgacactttagacctagctcaggcttggaggccagccggaggaaggccggtctgaatctgggcttgtgcagttagaggtaccatttcccctccccagcagcccttgtacagacccaaatttgctatgcaaaacagtctatcccaggttctgttctgattggctactttgttcagcgacttcacaaaacgtagcacaaacattgattatagagaaggcatcaggactgttgagtaactcctcctttacttctttcctactggctacagcgtggggtgccccatgggcacagcccagctgcagagcagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatactgtctacttcgtgttcagtcaccctttggggatgggagctctcttggaacaatgggctctgcatgttctcttcttgggtgcattttggggctgggatcagggcactatttctggagggtccagtcgttcaccagcatttgcaaatgtccatagggagctggtagtagccccctactctcagcaacaagtttgtgttctctcctttttctctctttgcctcactctctccagttgggttttgagctggggcttgaaatgcattttttagccctttggcattgcacatgccattcaagaaataaaagcaagagaagcagcttgggcaatggcaagaaaatgacttcttactctgctttttctttttagtcattgagacttgaaaaatacccttgaccttgaggattgttcttgtttgaaagatggtgcatgcaaattgagaagtggtgttggcaacaagttttggctttgttttaaggggtgcttcttacttaagctctaaggaaatgcttgggagacctcagcctcatcctcttagacaggtctcttgttcccttcattccactcttttgccttccttttcgtcttctctctttccctggcttccttttccttttttctcttcactcagcttgcttgctggcctgcctgcctacctatgtgatgatgaattctctgcatggctacaatgatcccactgttagctggcaaggtcaagcttagctccttggctgcagaagaccaagaatctgtccccaactccagtgatgtcctctctgggatggactgccctcaaacttacatgagggcagagcagcaggcctgcccaaatggcatgaaatcagggggcttctggcaacttccacacctgtccattccttggagttgttcctctcgttgctttttctggacctggttctatttctccctacctggggcttctcttttctgaggatttcctaggattgagctacttgtatccagggttgaagggttagggaatggacatgggggaagaagagagtgatgggaagaaaatggagagaatttggataaaaggtgggaaaggagagcactgcatattgatcatttttccagtccagcctgacctgttgggggttgaggtgctattgctggcctctggggatgagcctggggctgttgttgctgggaacttaggtttaaaataatgctgaagaagaaggtacctaaaagtgtgaaacctccctaaaaagctcttggttcccacctagatagctcctctgtggcctcctctttggctaagcaacaatgttcttgggtagttttcttatccagaattctgtaaatgaggctagcactgaagatgggcagctgaggggacactttgacttcttagctggcccataggatatctgcaaggctggtgggacagtgttttagacatggcatcatgtgtaacaaagaaggatggaggttccttccccttcagggtaggaggtcaactcaaactagccaaaatgcggttttggaaactacatcgggggaagttatttttatttatatttactgggcctaggccaattcaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttggccttttacgcagattggggaaaagagattctctggttttctctttacccccatttattaggacttgccttctccctgggcagggagggaggctaggttggtgctctccccttactctactcctactgacttagaacctctggctgctgtttgggagcccaagaaagggagtggagggaatgggctcaaaacaaaatgaaaaaaccagaataaagtggggaaggcaaatttccttctttaaaaaggaaaataggaaaccctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgagttccctggtgtagtagcaataaggaaaaatgaaataactttcctgtgcacacagtccaacctgattgctgtgtgatgtttgcacttagcagccgtctggtgggcatgtgtgactactctgggtttcacattagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtccctggagccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaagttatcccagcagctgtaatgtacagttccttctgaagcaagcaacaacagcagcacaattctgtgttttataaagacaacagtggcttctatttctaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]