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2024-03-29 06:51:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_044588501             675 bp    mRNA    linear   PLN 25-OCT-2021
DEFINITION  PREDICTED: Triticum aestivum protein argonaute MEL1-like
            (LOC123170705), partial mRNA.
ACCESSION   XM_044588501
VERSION     XM_044588501.1
DBLINK      BioProject: PRJNA764258
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Triticum aestivum (bread wheat)
  ORGANISM  Triticum aestivum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_057814.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Triticum aestivum Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 37% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Triticum aestivum"
                     /mol_type="mRNA"
                     /cultivar="Chinese Spring"
                     /db_xref="taxon:4565"
                     /chromosome="7D"
                     /tissue_type="leaf"
                     /dev_stage="Vegetative"
                     /country="USA: Davis, California"
     gene            1..>675
                     /gene="LOC123170705"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 62% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:123170705"
     CDS             1..>675
                     /gene="LOC123170705"
                     /codon_start=1
                     /product="protein argonaute MEL1-like"
                     /protein_id="XP_044444436.1"
                     /db_xref="GeneID:123170705"
                     /translation="
MHIYTITLFPSEYEKEYVIELNEGASEDASRSVSYSVTIHLAKSLKMQELKDYYNGEQSYVSQDILHAINVVVRALSSSCLNAPRAMFSTKFGPIIDTKEGLELWQGCYKGVCLSHYGLDLTIDTTVAPFYKSISMVKFVGEFLGRTDFNRAFSHKEYAKIERALKGVQVETIHHTDRTMKYRIKGLSVVPLKELMFSVDDDGIMTTVVDYYQSRYNCKLEYIHW"
     misc_feature    91..>666
                     /gene="LOC123170705"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    397..>675
                     /gene="LOC123170705"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
ORIGIN      
atgcatatctacacaatcactcttttcccatctgagtatgaaaaagagtatgtcattgaactgaatgaaggtgctagtgaggatgcgtcgaggagtgttagttatagtgtcacaattcatttggctaagtcactgaaaatgcaagagttgaaggactattacaatggagaacaaagttatgtttctcaggatattttacatgcaattaatgttgtcgtgagagcattatcttcaagctgtctcaatgctccaagggcaatgttttcaaccaagtttggtccgataatagacactaaagaggggctcgagctttggcaggggtgctacaagggagtttgcttgtcacattatggtcttgatttgaccatagatacaactgtagcacctttttataaatcaatttccatggtcaagtttgtgggtgaatttttgggccgaactgacttcaaccgggctttctctcataaagagtatgcaaagatagaaagagctttgaaaggggtccaagttgaaactatccatcatactgatagaactatgaagtacagaattaaagggcttagtgttgtccctttgaaagagctcatgttttctgtagatgatgatggtatcatgaccaccgttgttgattattatcagagtcggtataattgcaaattggaatatattcactgg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]