2024-03-29 17:16:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_044237795 3859 bp mRNA linear MAM 13-OCT-2021 DEFINITION PREDICTED: Neovison vison argonaute RISC catalytic component 3 (AGO3), transcript variant X4, mRNA. ACCESSION XM_044237795 VERSION XM_044237795.1 DBLINK BioProject: PRJNA769404 KEYWORDS RefSeq. SOURCE Neogale vison (American mink) ORGANISM Neogale vison Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058092.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Neovison vison Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3859 /organism="Neogale vison" /mol_type="mRNA" /isolate="M4711" /db_xref="taxon:452646" /chromosome="2" /sex="female" /tissue_type="tongue" /dev_stage="mature" gene 1..3859 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:122899748" CDS 175..2055 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_044093730.1" /db_xref="GeneID:122899748" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 175..516 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(310..312,355..357,397..399,409..411,463..465, 484..486,490..492) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 649..1926 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1060..1062,1072..1074,1108..1119,1126..1128, 1150..1152,1159..1161,1171..1173,1183..1185) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1264..1266,1270..1272,1480..1482,1894..1896) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
tctcagaagccagttaggaggctttttcaatcactagttcaggtttcagtctacatgttacttccttgagaagcagcatttgacacccttctccctccccatatcctgccatcccccaagtatgaattagtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcagccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaacggtcaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatatcgtggcagggcaacgatgtatcaagaagttaacagacaatcagacttccacaatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtacttccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtgtgggacatgcgggggaagcagtttcacacaggagttgagataaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatactgaagggtttcaccgaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaatacctactctgggctacagctcattatcgtcatcctgcccgggaagacgcccgtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggccacacagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttcgattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagcgaccccgacaggagatcatccaggacttagcctccatggttcgagaacttctcattcagttttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagatattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctactaacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaacgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaactgaaagaagcatcgacatacagcatatgtttctggtggagtcagttgagtggggatgcctccagccatacagcagccaacactgtgtggggaccagggtctgatttttatgttgatacaagaaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaaaagtaaagaaaaagtaaatgacagttaaaaaaaacacacacctacgtgaataatctaagtgattgttcatgattatgtgtgcaaaaaaattaatgtgcattcgtgtattcttgtaaaaggtatctgtgtatattttaaatatatacatgtatacttcatgtgcatatatatctggatctacattgataatagatatatatgtgtctgtgcgtgtattttatagttcattccattggggaactttctttcccttttattatcttcccaccaccactttgatttttctctctacctcccttgccttcattaactacatttttttttcttaatgctaccaatgacattcagatgtttcatgtatctggttcatttggatataaagcatggaaaactagatttttatttttattttgcacaccctactcctgtctcttgtctcacgggcaattccaagtcctcaactcttgatattgctttctgaagaaacaaaattactatatatatataactatatatatatatatatatatatatacacacacacaatgtttctgtgagaatgcgtgtctgccccctcctgctctgaatttacatttgccatttgtgcagtgtgtacataagcagtagcaaccttaaactattctttttctttagtctgttaaagctgctataaatataaaaccttgtcagaagttgtaactcagaaatttctctctataagtgatatgtattctaaagccttctgtttctatgggttatacatgaaagtcccttataacttttataaagggcaaatattctaaatgattggaactctttagggttgaggcctctgaaattgggtggagagagagaaggggttattgagggtttttttattttattttattttatttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatatttttatatatatgtgtgtatatataaacatatatgtatgtgttttgaagtacagcttccttttcttttatatttattagaatagtgctttaataattagagaattgtattggcaacgtcttttatagaaatgtaatcatgtttattttaagaactgacaacttgttttttgctgtcttttagtgcaataagcagttttaaaggaaagctgtgtctgtttgatatctttaccacggatagtgggagaaacaggcacctccataattttaaaagggcaaagtaatacagccttaatttcagaaggaaagttttgtaatttttcaagtttaaagcatgtcttttaaaaatcataatgaaaatcaagaaagttaaatttcctaatgagtctgaccgtgattattagagatagagttgagctttgttttaagaaatgacagtgaatgggtcacctagctggctcagtcactagagcatgtgactcctgatatgggggttgtaagttcaagccccacactgcg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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