2024-04-25 15:43:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_043871674 1530 bp mRNA linear MAM 27-SEP-2021 DEFINITION PREDICTED: Cervus elaphus distal-less homeobox 5 (DLX5), mRNA. ACCESSION XM_043871674 VERSION XM_043871674.1 DBLINK BioProject: PRJNA764704 KEYWORDS RefSeq. SOURCE Cervus elaphus (red deer) ORGANISM Cervus elaphus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_057832.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cervus elaphus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1530 /organism="Cervus elaphus" /mol_type="mRNA" /db_xref="taxon:9860" /chromosome="18" gene 1..1530 /gene="DLX5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 17 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns" /db_xref="GeneID:122673803" CDS 290..1159 /gene="DLX5" /codon_start=1 /product="homeobox protein DLX-5" /protein_id="XP_043727609.1" /db_xref="GeneID:122673803" /translation="
MTGVFDRRVPSIRSGDFQAPFQTAAAMHHPSQESPTLPESSATDSDYYSAPGGAPHGYCSPTSASYGKALNPYQYQYHGVTGSAGSYPAKAYADYGYASPYHQYGGAYNRVPSAASQPEKEVAEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYPSAASSINSHLPPPGSLQHPLALASGTLY"
misc_feature 383..643 /gene="DLX5" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(701..715,719..721,770..772,788..790,827..829, 833..838,845..850,854..862,866..871) /gene="DLX5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 707..868 /gene="DLX5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(707..709,716..718,836..838,845..850,857..859) /gene="DLX5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" polyA_site 1530 /gene="DLX5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
acgagttagggtgttgctgctgctccggaggccctggccaatggaacccgatccaccccgctgtgcgtaagcgcgcaattaaggatttaaccaaggctgtgctgcgcttcagccagcagtcagccagccggagacagagcctccgcgactcccagcctcctcctcgccgccgccgccgcctctcctcctcctcctcttcctcctcctccctcgctcctacagccatgtcagcttagaccggagcagccccacagccaattcgggccgccgccgccgccgccagcgagcgatgacaggagtgtttgacagaagggtccccagcatccgatccggcgacttccaagccccgttccagacggccgcagccatgcaccacccgtctcaggaatcgccaactttgcccgagtcgtcggctaccgattccgactactacagcgccccggggggagccccgcacggctactgctctcctacctcggcttcctacggcaaggcgctcaatccttaccagtaccagtaccacggcgtgaccggctccgccggcagctaccccgccaaagcttacgccgattacggctacgccagcccctaccaccagtacggcggcgcctacaaccgcgttccgagcgccgccagccagccagagaaagaagtggccgagcccgaggtgaggatggtgaacggcaaaccaaagaaagttcgtaaacccaggactatttattccagctttcagctggccgcgttacagagaaggtttcagaagactcagtacctcgccctgcccgaacgcgccgagctggccgcctcgctgggactgacgcaaacacaggtgaaaatctggtttcagaacaaaagatccaagatcaagaagatcatgaaaaacggggagatgcccccggagcatagccccagctccagcgaccctatggcgtgtaactcgccgcagtctccagcggtgtgggagccccagggctcgtcccgctcgctcagccaccaccctcatgcccaccctccgacctccaaccagtcccccgcgtccagctacctggagaactcggcttcctggtacccgagcgcagccagctcaatcaattcccacctgccgccgcccggctccttacagcacccgctggcgctggcctccgggacactctattagaccagccgctttctctagctctcttttttgggactactgtgtttttgctgttttagaaaatcaacctttttttaaaaaaaggaattcatatgggaaagtttggaaaaaacggaaacaaaaaaattcatgtgtaaagcttttttttttttttgcatgtaagttattgcatttcaaaggacccgtcccccctttttttacagacgaacatttttgcgcaactgtggacactatcaatggtgccttgaaatctatgacctcaacttttcaaaagacttttttcaatgttattttaaccatgtaaataagtgtagatagaagaattaagctgtatattctggataaataaaattatttcgaccatgaaagcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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