2024-04-25 00:07:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_043179352 1829 bp mRNA linear PLN 22-NOV-2021 DEFINITION Guyanagaster necrorhizus MCA 3950 PAZ domain-containing protein (BT62DRAFT_1078051), mRNA. ACCESSION XM_043179352 VERSION XM_043179352.1 DBLINK BioProject: PRJNA756328 BioSample: SAMN05660966 KEYWORDS RefSeq. SOURCE Guyanagaster necrorhizus MCA 3950 ORGANISM Guyanagaster necrorhizus MCA 3950 Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Marasmiineae; Physalacriaceae; Guyanagaster. REFERENCE 1 (bases 1 to 1829) AUTHORS Koch,R.A., Yoon,G., Arayal,U., Lail,K., Amirebrahimi,M., Labutti,K., Lipzen,A., Riley,R., Barry,K., Henrissat,B., Grigoriev,I.V., Herr,J.R. and Aime,M.C. CONSRTM DOE Joint Genome Institute TITLE Adaptations for nitrogen fixation in a non-lichenized fungal sporocarp promotes dispersal by wood-feeding termites JOURNAL Unpublished REFERENCE 2 (bases 1 to 1829) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-NOV-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1829) AUTHORS Ahrendt,S., Riley,R., Koch,R.A., Yoon,G., Arayal,U., Lail,K., Amirebrahimi,M., Labutti,K., Lipzen,A., Barry,K., Henrissat,B., Herr,J.R., Aime,M.C. and Grigoriev,I.V. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-NOV-2020) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_025064899). ##Metadata-START## Organism Display Name :: Guyanagaster necrorhiza MCA 3950 GOLD Stamp ID :: Gp0036668 ##Metadata-END## FEATURES Location/Qualifiers source 1..1829 /organism="Guyanagaster necrorhizus MCA 3950" /mol_type="mRNA" /strain="MCA 3950" /culture_collection="CBS:138623" /db_xref="taxon:1450536" /chromosome="Unknown" gene 1..1829 /locus_tag="BT62DRAFT_1078051" /db_xref="GeneID:66101646" CDS 208..1470 /locus_tag="BT62DRAFT_1078051" /codon_start=1 /product="PAZ domain-containing protein" /protein_id="XP_043037344.1" /db_xref="GeneID:66101646" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR014811" /db_xref="JGIDB:Guyne1_1078051" /translation="
MTPPRMAPGQRGGSPHPATQQRGGTPRGRGGARGGGAAGRQGGPSVPVASAVEAIGVRRPGLSTAGRASTVRVNACEMNVPDITVYHYDVAIKKTLRAALKMLFIEALQVQYPDVFIKAAVYDGKKNLYTSHRLDFGTGNSRQFNVTMMQGTGMSNFKITITKVREINMEVLSRYVAGQQSWDKNVSTALTALNIVIRMAPSLTYPFQVGSFYSDKIKVPLANTGLEAWQGYFPSVRPTLNRLIINIDISTGVMFKPGSLMETCLEFFTGNRGNNPDRYLRTSGPQALSPMQRHRLQTFLFGLNVEAESAAGVRKKYSIHKLSERDAISTVFTPAGGAQTNVAQYYAQANRPLRHANIICIQTANDAVIPLERCYILPGQLSRAELSLDATRAMVEFATKNPDDQLRAIKTGIQVHFLFY"
misc_feature 337..>1434 /locus_tag="BT62DRAFT_1078051" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 574..798 /locus_tag="BT62DRAFT_1078051" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 838..975 /locus_tag="BT62DRAFT_1078051" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" ORIGIN
tcgtccttgacaacttcttacccttgttcctatcgattggttgatacggagcgaacaaagcgccggctatacccggtagctttgaacgttcctctcggcatcgcggctagccacgagatataaagggaacacttgatttgattcagcatgggattgccttcctaaacagtcatctaaccttttttctactctgcatttactatcgatatgacaccgccacgaatggcacccggtcaacgaggagggtctccccaccctgctacccagcagcgtggaggaactcctcgagggcgaggtggcgcacgaggtggaggagccgctgggcgacaaggcgggcctagcgtccccgttgcatctgctgtagaggccatcggtgttcgtcgtccaggattgagtactgcgggtagggcaagtacagttcgtgtaaatgcatgcgaaatgaatgtccctgacatcaccgtttaccattatgacgtagcgattaagaagacactcagggcggctttgaaaatgctgttcatcgaggctctgcaagtccagtaccccgatgtctttatcaaagcagctgtgtatgatgggaagaagaatttgtatacgagccataggttggattttggtactgggaattctcgccagttcaacgtgactatgatgcaagggactggcatgtccaatttcaagatcaccatcacgaaggtgagagagattaacatggaagtgcttagcaggtacgtggctggtcagcagtcatgggacaaaaacgtctctactgctcttacagccttgaacattgtgattcggatggcgccctctctcacctatccattccaagtgggctcgttctatagtgacaagatcaaggtgccgctagccaatacagggttagaagcctggcaagggtactttccgtcagttaggcccactttgaaccgtctgatcatcaacatcgatatttccaccggcgtgatgttcaaacctggttcgctaatggaaacctgtcttgaattcttcaccgggaatcgtggaaacaatccagacaggtatttacgaacatctggaccccaggcgttatctccgatgcagagacatcgtttgcaaacatttctttttggcctcaacgtcgaggccgaatcggccgcaggtgtaaggaaaaaatattccattcacaaactgtctgagcgagatgctatttcgactgttttcactccggctggtggtgcacagaccaacgtggcgcaatactacgctcaggccaatcggcctctacggcatgccaatattatctgcatccagactgcgaatgatgccgtgattcctctagagcgatgttacattttacccggtcagctttctcgcgctgaactatctctggatgctacacgagccatggtcgagtttgcgaccaaaaaccccgatgaccaattgagggcaatcaagactgggattcaggttcattttttgttctactaatgttatttactcatattccctcaggttcttgcatttggacaatcccgatatgtccgcgactttggactagacatcaagaatgcttcctgacctatggatattccagcacagatcctcaatgcgccggagctcgaatacggacaaggattcaagcaaaagttggtttgaccgagggatgaagcttggaacctgtaatgtcatggatacttactaatatctatatttagtcttcactttcttcactcttctttttattttgatgcagtacaagaaatttctcgatgtttctctctaaatttctcctggtatcttttagaactttgcaataatataaaactgtatgaaaatactagaagaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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