2024-04-19 05:32:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_042482082 3105 bp mRNA linear VRT 19-JUL-2021 DEFINITION PREDICTED: Plectropomus leopardus GTP binding protein 3, mitochondrial (gtpbp3), transcript variant X2, mRNA. ACCESSION XM_042482082 VERSION XM_042482082.1 DBLINK BioProject: PRJNA744194 KEYWORDS RefSeq. SOURCE Plectropomus leopardus (leopard coralgrouper) ORGANISM Plectropomus leopardus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Plectropomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_056465.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Plectropomus leopardus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3105 /organism="Plectropomus leopardus" /mol_type="mRNA" /isolate="mb" /db_xref="taxon:160734" /chromosome="3" /tissue_type="muscle" gene 1..3105 /gene="gtpbp3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:121938921" CDS 250..1794 /gene="gtpbp3" /codon_start=1 /product="tRNA modification GTPase GTPBP3, mitochondrial isoform X2" /protein_id="XP_042338016.1" /db_xref="GeneID:121938921" /translation="
MMLSSIYRGIWRAAVHTLTTRGTPYRFLSTSDRLPLADAESIFALSSGHGRCGVAVVRASGPASATALKCMTGLTHSLPPPRTAMLRNITDPQTKEVLDRGLVLWFPAPHSFTGEDSVEFHIHGGPAVITGVLQALGSVPGMRPADAGEFTRRAFQAGKLGLTEVEGLGDLIHAETEAQRRQALRQMSGELGRLYQDWSHRLKRCLAHVEAFIDFSEDELIEDGVLNQVDRSVCDLQTQIECHLKDERRGERLRSGVLVVIAGATNAGKSSLLNTLCQRPAAIVSPIAGTTRDVVEMALDIGGFPVLLSDTAGLRESPDLVEREGVRRARERVEQADLTLVVVDSSHLPSDAQKAAAFLQEYLGSVLPTVEQPETVFPADRFLLVLNKTDLLPQEQKLKLDRQLRQVSGLPPVCFISCHTNEGLQDFLAVLHSSVKTLCGDPLSGAPSLTQARHRAHLQQCVSALAQYQRYRDIDLALAAEGVRLALTSLGRITGRVGAEEILDIIFKDFCIGK"
misc_feature 373..1791 /gene="gtpbp3" /note="tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Region: trmE; PRK05291" /db_xref="CDD:235392" misc_feature 1036..1059 /gene="gtpbp3" /note="G1 box; other site" /db_xref="CDD:206727" misc_feature order(1045..1047,1051..1062,1408..1413,1417..1419, 1498..1506) /gene="gtpbp3" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206727" misc_feature 1081..1131 /gene="gtpbp3" /note="Switch I region; other site" /db_xref="CDD:206727" misc_feature 1120..1122 /gene="gtpbp3" /note="G2 box; other site" /db_xref="CDD:206727" misc_feature order(1174..1206,1210..1254) /gene="gtpbp3" /note="Switch II region; other site" /db_xref="CDD:206727" misc_feature 1177..1188 /gene="gtpbp3" /note="G3 box; other site" /db_xref="CDD:206727" misc_feature 1408..1419 /gene="gtpbp3" /note="G4 box; other site" /db_xref="CDD:206727" misc_feature 1498..1506 /gene="gtpbp3" /note="G5 box; other site" /db_xref="CDD:206727" ORIGIN
cttgaaagtcgccggtgctggagcttgttacttaatgaagctttcacagaataatatagtaagcctaaacttgatgaattatcagcattatcagctaacgttacatttcaggttacttccggacattagcttaaagtgaaaaaggtaaaaataatgattttgtcaaggacacatcctgtttcagtgtcagtctgtgaaatcagacacaccagaaacagcacatgaaacgtttggtgttagtatattttaatgatgctgtcatccatttatcgtgggatatggagagctgctgtccacacgcttacgacaagaggaacaccttacagattcctctccacttctgatagactcccactggctgatgctgagtccatctttgcattatcatcaggtcatggcaggtgtggggtcgctgtggtacgagccagtggtccagcttcagctacagctctgaagtgtatgactggtctcacacacagtctgccgcctccacgcaccgccatgttacgcaacatcacagacccccaaaccaaagaagtgctggaccgtggacttgttctgtggttcccagctcctcacagtttcaccggagaggacagtgtggagttccatatccacggaggtcctgctgtcattactggtgtcttacaggctctaggaagcgtgcctggcatgaggcctgctgatgctggagagttcacgcggagggcctttcaagcagggaagctgggtttaacagaggtggaggggcttggggatctgatccatgctgagacagaggcccagaggagacaggctctcaggcagatgtcaggagagctgggacggctttatcaggactggagccacagactgaaacggtgtctggctcatgttgaggccttcatagacttcagtgaggatgagctcattgaggatggggtcttaaaccaagtggacaggtcggtgtgtgatctgcaaacacaaattgagtgccacctaaaggatgagaggcggggtgagcggctacgcagcggagtcctggtggttatcgcaggggccaccaatgcagggaaaagtagcctcctcaacacactctgccaaagacctgcagccattgtgtcccccattgctggcaccaccagggacgtagtagagatggcacttgacatcggtgggtttcctgtcctcttgagtgacacagccggcctcagagagagccccgacctggtggagagagagggggtacgccgagctcgagaaagagtggaacaggcagatctgaccctggtggttgtggactcttctcatctcccctctgatgcacagaaagctgcagccttccttcaggagtacctcgggagtgtcctgcccactgtggagcagccagagacagtgtttcctgcagacagatttctcctagtgctgaataaaactgacctgttgcctcaggagcagaagctgaagctggacaggcagctgagacaggtctcaggactccctcctgtttgtttcatctcttgccacactaatgaaggactgcaggacttcctagcagtccttcacagcagtgtcaagactctgtgtggagaccctttgtctggtgcccctagcctgacccaggctcgccacagggcccacctgcagcagtgtgtttcggccctggctcagtaccagcggtaccgcgacatcgacctcgctctggcagccgagggtgttcgtttggctctcaccagcttgggccggatcactggacgtgttggggcagaggagatcctggatatcatcttcaaagacttttgcattggaaagtagtcagatgagtaaaaacatgaaatacatgtaatatcagtctgctcagagcggaagtctgcattcttgtttggtcccagagtatcagttaagaaaacaagaaaaaaagggcaacgcctcggcataatgccaggcttcgaggcgcagcaagagtaaaaagaagaaaattcatgttcttggctgcaggatcactctgctcccaagacacattaatctttgttttccatagatgctctttgagagcctgaaatatttttaacgtgatgacaggtgcctcaaaagccccgtttgctagacaagtgtttggcaagtcttgagtcgtaatttaaaaatagcttctgaaagcctttgataggtgaacattgggctcttgggtcccaacataacagccaagatcatttaaaatacagccagctgcagacctctgcaaggtcatggacccatagtttggatgtttacttgtactgcaggacaatgaataattttcctttttgggagcagatatttcagctgcacccctcggtgtttgtctgaatgctagaatgcttcacgaatcagttaagatgcagttacagttaaatctatgtctgttgagactcatgtgatgttttgtttttctaagtgtttttgcagaacattaagatgtcacagtaaagcttacctttgaacttttggatataaaatgtcttcacattatattcctttagacatttgtgtgaaattgagttatggccaaaaacatttttagtcaggtcagagtgaccttgatcttgtgcatcaaaatctaatcagtcttttgttgtgtccaagtgggcaattgtgccaaatttgaagaaattccctcacagttttcttgagatatcacattcatgcatatgagatggaggtcacagtgaccttgacctttgacctttaacacctaaaaactaatcagttcattgtcaagtccaacattgagttgaactcgacaatgactagctttgattccagccctgagacattttttacatgtcaaaccccgctctttctctgtccccaatttctgcaccatactctgtcaaattaaggaaaaagtgccacaaacaattattttttaaaaccaaaaaaagtgttatttgcctatttacacacccatccgacagggaacaatattaccattatgtttctgtttattgtgttcttacatgttattacatatttgaaggtgcatcaggttgttactgtaattaaaaagaatgtaaggctttaaaaaagcagggtgtttacaagaccttaaaaagttttaaaatgtattcgattcagacttagacttag
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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