GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 21:25:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_041809625            6572 bp    mRNA    linear   VRT 26-MAY-2021
DEFINITION  PREDICTED: Cheilinus undulatus argonaute RISC component 4 (ago4),
            transcript variant X2, mRNA.
ACCESSION   XM_041809625
VERSION     XM_041809625.1
DBLINK      BioProject: PRJNA731939
KEYWORDS    RefSeq.
SOURCE      Cheilinus undulatus (humphead wrasse)
  ORGANISM  Cheilinus undulatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Labriformes; Labridae; Cheilinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_054880.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cheilinus undulatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6572
                     /organism="Cheilinus undulatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:241271"
                     /sex="female"
                     /tissue_type="muscle"
                     /linkage_group="16"
     gene            1..6572
                     /gene="ago4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:121524302"
     CDS             168..2792
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_041665559.1"
                     /db_xref="GeneID:121524302"
                     /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
     misc_feature    249..638
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    669..821
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    822..1184
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(978..980,1023..1025,1065..1067,1077..1079,
                     1131..1133,1152..1154,1158..1160)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1323..2663
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1767..1769,1779..1781,1815..1826,1833..1835,
                     1857..1859,1866..1868,1878..1880,1890..1892)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1971..1973,1977..1979,2217..2219,2631..2633)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
cagcggcggtagttcaggtcagtcagtccagtcagcagtcatcctcgcgtctatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagcgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcccgcaccaacctctctgtttcagcctccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggttcagattcccaagattgatgtctatcattatgatatcgacatcaagcctgagaaacggcctcggagggtcaacagggaggtggtggacacgatggtgcggcacttcaagatgcagatctttggagaccgacagcctggctacgatgggaagaggaacatgtacacagcacatccactgccaattgggagggacagggtggacctggaggtgactctacctggtgagggaaaagatcaaacgtttaaggtgtccttgcagtgggtgtctgtggtcagtcttcagatgctgctggaggctctgtcaggtcacctgaacgaggtccccgaggactcggttcaggctttggatgtcatcacgcggcacctgccctccatgaggtatactcctgtggggcgttcctttttctcacctccagagggctactaccatcctctgggtggaggcagagaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaatattgatgtgtcagccacagctttctaccgtgctcagcctgtgattgagttcatgtgtgaggtgctggatatacagaacatcaacgaacagaccaaacccctcactgactcacagcgtgtcaaattcaccaaggaaataagaggcttgaaagttgaggtcacacactgtggtcaaatgaagaggaagtaccgtgtgtgcaatgtaacgcgccgacctgcaagccaccaaacgttccccttacagctcgagaacggccaagccatggagtgcacagtagctcagtatttcaagcagaagtacaatctgcagctcaagtatccacatttaccttgcctgcaagtagggcaagaacagaagcacacctaccttcccctggaggtctgtaacatcgtagcgggccagcgctgtatcaagaaactgacggacaaccagacatccaccatgatcaaagctacagctcgctctgcccccgacagacaggaagagatcagcagactggtcaaaagcaacagcatggtcgggggcccggacccttacctgaaagaatttggcattgtggttcacaatgacatgactgaagtgaccggccgtgttctcccagcacccatgctgcagtatgggggccgggtgagtacagacacagggcgggactgtggcaggaataagaccgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcatcgagatcaaggtgtgggccgtggcctgcttcgctccacagaaacagtgccgggaggacctgctcaagagtttcactgaccagctacgaaagatctccaaggatgctgggatgcccattcaaggccagccatgtttctgtaaatatgcccaaggagctgacagcgtggagcccatgttcaaacacctcaagatgtcttacgtaggactgcagcttatcgtggtcatcctgcctggcaaaacacccgtctatgctgaggtaaaacgtgtgggtgacactctgctcggcatggcaactcagtgtgtgcaggtaaagaacgtagtgaagacgtcccctcagaccctctccaacctgtgcctcaagatcaacgccaagctgggaggaatcaacaacgtcctggtgcctcaccagaggccctccgtgttccagcagccggtcatcttcctgggtgcagatgtcacccatcctccagcaggtgatgggaagaaaccgtccattgcagcagtagtgggcagcatggatggccacccgagccgttattgcgccacggtgcgagtacagacgtccagacaagacatgtcacaggagcagctctttagccaagaggtgatccaagacctgaccaacatggtgcgggagcttctcatccagttctacaaatcaacgcgcttcaagcccacacggatcatctattatcgcgggggtgtgtcagagggacaaatgaaacaggtagcgtggccagagctgatagctatcaggaaggcctgtatcagtctggaggaggattacaggccaggcattacttacatcgtggtccagaaacgtcatcatactcgtctcttctgctctgacaaagctgagcgggtcgggaagagtggaaacgtcccagcaggcaccacggtggacagcaccatcacacacccgtccgaatttgacttctacctgtgcagccatgcagggattcagggaaccagtcgtccctcccactaccacgtcctgtgggatgacaactgtttcactgccgatgaactgcagctcctcacctaccagctgtgccacacttacgtccgctgcacgcgctcagtctccatcccagcaccagcttactacgctcggctggtggctttcagagcccgctatcacctggtggacaaagaccatgacagtgctgaaggcagccacgtgtcgggccaaagtaacggccgggaccctcaagcgttggctaaagcagtccagatccactatgatacccagcacaccatgtacttcgcctgagctagcaagcacgtcagccagtccacccgcggattccctttctctctgttatttacctctctctctttctctctttcttcttctgccacctctctctctctccttgtagtccgtctttctctcttcacactcattctacattttctgaatctgcaccaaagcggctcttggacgggggaatctgccgcgtctttacacccggcaggtttttttgtttcaaggaacaatttccaaccagcgttcccaacccgagccgccttttcaaaccagcaatccagcactgcgagccccgcagaggggtttccactgcacaaaagaagaaacaaaaccgtacatactacaagttgagccattattttgagtttgttttttttctatttgaatgtctgcactcttgtgtttgtaagatacactgagcaagggagtggattggcacagtttgtgtcagcgcagctctttagctctcccagctaagcaggactcttatctacttttacctcaaagcccctttgggcaaaaatctgtcacaaggtcttgggtttattgggtggaggggaggggactatacaggaaaagagctggagggaggggagtcgaccttttgagaatgatatatatatatttttcctttttatgagcgtgtgttttaactttttctcctttaccgtcttttacaagcgaggtgacctgggtgtcatgcccattactactttcctcccatcttagcaaagaagtctttatgtgtgagtgcgtgtatgtgtgcatctctgtatatacatgttctgctgtatatgagtgtttgtgagcgcacgtgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagatttgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgagacatatgacttaaaacaggcctcacagaggctggtgtgggtatttgtagcagccctgaatcacttcttaatcgaaatgcgttcagttatgagttagcttgatgccaatgctagaaacaaggtgccttcgtgtgcctaaaaaatgaagtaattgagtgtttttgaatattaagtgagttcaggtctgacgtgtagcagtagtaaccgcggtctggcctgtgactggctcagcattgggacctgttgaacggctgaaggcataaacgcagaatacggtcttatcagcctttctgtgtgaaagcaggatcttaattttttttggacctgaaagatattatgacgacactgctgggcgttgctttactttgtttttttctttttgtattagtttcaagggccggaaaccaatgtagttttttgtttattttgaggtctcctttgctaactggccaactcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcttacctttatgcatttatacatacgaatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcttaaaaaaagaactgttgtttagacttagtagtttaccattgatgttgttgttgttatcgttgttgtcaatgttgttactattgtgatgaaattttaaggttggcggacaaagccagttctatagttactagtacgattcaggaatagatttcagttttcgagctgcaggtgaaagggggtagagctttgggttttattttgtagcattcgggttcataatgagaagaagtaaggccccaggacggatgctacctcggtaggacgagcgtcaaatctagcggcaggttcaaggtaacgtgtagcactccagatctgccgctgtgtttatcattcagctggcttctgtgggattaagatcagatagatggagacaatcagggattgtaatcagagtgaacctagattaagggattctgttgaagcgataggcaatgagttgaatttttagactttttaaaaatggtttctattatctgtgtgtatttgaagtatacccatcttaaagtctcttaaagctatttgactgtgtttgttccagatttttatgcatttttaacactggattaaatgaatcgacaataagcataagcactgccctcggaccccgtgtacaaacacttatggtgccccctggtgtcgcaattggggaaaaaacgcaggatagggactgaagggagggaggtcgacgtgcacgcctcatcagggggggaacggctcagtgaaaacgcttttgtaataaaccacccgtaaagcagcaggtttactatgaatgagtttgagcacccgcctgttggaggcgtgggcgttggcgcgggcaggaaccgaggagagctggtaaggggaaggcaagggtcgataatagggaagggggttgtccaggcattgcatgcaataagtttttgttaaaaaagggcagatcagattttaaaacatgcactagctctaagcaaacccggctgtggttaaacattcatctggcatctctaaagggggtttttatacaagattagatcctgaaactccagtctgaagaacagtcactccctgtttgtaacattgcaaagcaatattaaacccagttctagtttcaaacacggataaacaaagctataattctactcattgtggttgttggtctactctcgcagttgtgtctctgtactttttatttttttaacttttagttcatttgatttgcttgtatcaatcagtgggaatgtgcatttggtggaatagttatgtaggctttagacaatgtttcttttttcaagtaacaaaatgtagactttgctcgcctgcatgccagagtatcgtcctttttgaaaaaagacaaaaaaacttttttggaatcatatttattatgagaaagaaaacatataaatgcttttttgggtaaatgtttatggatttagtgggactgttttaggctagcaatatttgtccagtctctccaagacacattttaaagattcctacacaaatgtcagtaattttaggaggtacactctttctggaggggagggggtcggatctttgcatcgtgttcaaatccaaacgaggtactttcttcaaacgtgaaccatgtgaaagaacgaagccctctcctcctttgccaggttactgcaggggagcgtccacttaagtctcctcgctcctggtttgtacctgtggccacacctcctggttggggctctcctgtctccatggcaactacgctgacccctcacgaatgcacttcctctttgtgtcggggtcctggagcaggattccctctttttaacctttttagaaaaagatccataaatctttctgtgccccgatattcagagagcatgaattatttttaaattcctctcactttgatatattgttatatcttaacagatttgtaatttgacattgtgtatcgtgtattttatttgcccttctttcagttcctgtttttcggggggatttgttatagctttgctctgtttcttttcctttctgctagtggtctctgaagctgtgtctgattgtctcatagcaatagaatcacagagttggaacattccgattctgtgaatgaacggaatccttccagttgtgaggaggcggggttatgttgtagctccacctcctagcagagggccattcaaacgctggtattgctattatgtgacatgttcaaattcatttttttttttagcctgcagggaattcttgtgttaatgtgcaaagtaataaattggtattttatgcccat
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]