2024-05-08 13:26:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_041505470 4741 bp mRNA linear INV 09-MAY-2021 DEFINITION PREDICTED: Gigantopelta aegis F-box only protein 16-like (LOC121377468), mRNA. ACCESSION XM_041505470 VERSION XM_041505470.1 DBLINK BioProject: PRJNA727593 KEYWORDS RefSeq. SOURCE Gigantopelta aegis ORGANISM Gigantopelta aegis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Neomphalina; Neomphaloidea; Peltospiridae; Gigantopelta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_054705.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gigantopelta aegis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4741 /organism="Gigantopelta aegis" /mol_type="mRNA" /isolate="Gae_Host" /isolation_source="hydrothermal vent" /db_xref="taxon:1735272" /chromosome="7" /tissue_type="foot" /country="Indian Ocean" /collection_date="2019-04" gene 1..4741 /gene="LOC121377468" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:121377468" CDS 74..1105 /gene="LOC121377468" /codon_start=1 /product="F-box only protein 16-like" /protein_id="XP_041361404.1" /db_xref="GeneID:121377468" /translation="
MSKIAKNTKKSTWTPLTNQATNNKIFEERRVLIGKWYDRWTDDQRKKILDDLVSKSKRKQLDYARDLINRRVTERHLDFTRTLPRVISLYILSFLDPRSLCRCSRVCWYWKFLSELDQLWMPKCLRLGWILTFSPSPYEGGVWKRNYVENIKSLQVLRPKETMHIDLANMHMDKRNMKEKKHKSKETHTLPWRGSDPVPQDIWRYNVLSNEDDVHTVNKWRKMKAYGSAVDAFSKSMRRSKTATGQSLNSFTRRSQSLSKLHASVTSMTSPDRPQWAIKTSQLIGRQNGEVSAVVRPKPVSTPKTPRSARALTSTRSERDPPTTDLFPDKPWVVPDQMESDED"
misc_feature 299..460 /gene="LOC121377468" /note="F-box domain found in F-box only protein 16 (FBXO16) and similar proteins; Region: F-box_FBXO16; cd22172" /db_xref="CDD:438943" misc_feature order(320..322,332..334,341..346,353..358,368..370, 374..379,389..397,401..403) /gene="LOC121377468" /note="putative Skp1 binding site [polypeptide binding]; other site" /db_xref="CDD:438943" ORIGIN
ttcaatgtaaacaagttagtgctcgctttcagtgtaattaaccggtttgttaatggcatattaagtatctaatatgtcgaagatagcaaaaaatacaaagaagagcacttggactcctcttacaaaccaagcaactaacaataagattttcgaagagagaagagtgctcataggaaaatggtatgaccgatggacggatgaccagaggaagaagatattggatgatctggtttccaagagcaagagaaaacagctggactatgctagagatctcataaaccgcagagtcacagaaagacatttagacttcacacgcacactgccaagagttatctccctctacatcctctcgttcctggatccacggagtttgtgtcgatgttcacgggtctgttggtactggaaattcttgtcggaacttgaccagctgtggatgccgaagtgtttacgacttgggtggattttaacgtttagcccgagcccatatgagggaggggtatggaagagaaactacgtggaaaacatcaaaagtctacaggtgctgagaccaaaggaaacgatgcacatcgacctcgccaatatgcacatggacaagaggaacatgaaggagaagaagcacaaatcaaaagagacacacacgttgccatggcgagggtccgacccagttccgcaggacatctggcgttacaacgtcctgtccaatgaggacgatgtgcacacagtcaacaagtggagaaagatgaaagcatacgggtctgctgttgatgcattttctaagagtatgcggcgaagtaaaacagcgaccggtcaaagtctaaacagttttacacgtcgctcgcaatcactgtctaaacttcacgcgtcagtgacttcaatgacctctcccgaccgacctcagtgggccataaagacgtcccagctgattggtcgacagaacggcgaggtttccgctgtagtccggccgaagccagtcagcacgccgaagaccccgagatctgcacgagctttaacttccacgcggtccgagagagatcctccaaccacagatctgtttcccgacaagccatgggtggtgccagaccagatggaatccgatgaagattaaagggaagtaatccagttccgcttaacatccagcggttttacatgaacagtgttgaaaacaccttcacttaaatcattccataaaaagatatattattatggcattagatgaaagcagaaacaaatattacaaaataaaatagttattttaattattattgcatttaaatggaaacagaaagacaattaacttgttaatacatgtatatcaagttttcatttcaaaacagggctcgaacttaatgcaggcactgacagcaattactcttaactgcagtgtaaattactgtgggtcaggggactgtgtgtgggtgtatgtaatttttgtttggcatgcttccatcagagaactgttcaagcacgcctgtcgtgagcacaaccgctgacttcgccagagttttgtccatatcaggggtcaggagtctttactaacaaaagttttatttgtgtcgatgaatgaaaaatatagccatcagtggaagggatattactggtttttaattgtttatttgttgcaaacattaccgatttaaaattgctataagttggctgaaaattgtcatatttcagaattttgccggtggcaaaaaactttcataattgctgtaggcaacacattcctaagttcgagccttgttattaatgttatattattattattacatttaagcaaaaagagaaaatcactggttgatacatcattccataatagttgtttattatattactgcaattatatggaaacagaaaaattgcttattaatacatgtactttgtatgtcaagtatttttaaatataaaaaacttgtagaaccagttttttaaaaataaaatgttttcagtacttaaaaaacactttgtctttaagaaagcaatttctgtacttcttgaaacaatgttttactttgtttgaaaggatcttttgtagtgtttacttttattttacaactatgaaagatacttgttcttaatatctttttataaatggaaagaatattgataataaaaatgtattttttatgttttttattgctgtgataaatgtttcatctacctgcattccactctattatatatgatatttatttttatatacatgtattatattgtaaatgatccgaattgtatgatgtaattagatcaattatatgtaaatgtatggagcaaatgtttatagtcatctttaaatgggtagaatgtatattattattatccaattaagtttcaagcacgctgtcctgggcacacacctcagttgtctgtccaggacagtgggatagttgttagtggttagtgagaaagaaaagggtgtagtggtcttacacctacccatcgagtcattgaaacttgcactgggtgagagccagtaccatgatgcgaacccagtacctaccagccttatgtctgctggcttaaccactgtgccaccaaggccagttgtattaccggtattggttttgactacaaggattccactatgagtgtttgttggtatgggtttattttgagagtgttgtatccatttaggatgccatggaatattctgaatttaaccacaacactaccactggattcatccatgtatgtaccgtacatgtgtgtgcatatgtgcgtacaatgacgagggtagaatcggaggaataattattgtctctttcaggattgtttgtcatttcttttacatttattggggcatgaacaaaacaaaaatcacccgtaaaatgtgtgaatcggtgaagccgtttctcacataagtttgcatattatttttttgttttttgatacccagatgaatgtaaaagaaataacagacaatccttataattaaatttgaatcatacttgctaataataacactaaaagtttatactttattttggtccataaacaataacactttacaagacaacttgtccacataaaacgacgtcgtcagatatgacgttccctgacgacataatttttaagttcatcaagaaattaacaaacttccattgttatgtctgaaccaatgggatgacattatattgtaatgaatgtaagggaaagttaattatttgtatatagtcccatactgcagtggtgttttttatgggggtgttttttttagagaaaatgaacaaccatactattattgtgttaccgaaaaaagaagaagagtgaaatggaaagaccgagaaaaagaaacacgtgtattttaattcatattgctaacaaaaactgcactgattggcatttaatttcttgtttttttaaggcagcacaacactggattttaattggttgctttttgctttgtgtaacattttagaaaaatacatttaataataatttaagattttctatctgttttgaaaaatataaaggttgtctaaatctgttacttagcatttactttttacattttatacttaatattcttttattgaaattgatacagtgtatattcagttggcataaaaaaaagattatttatttgtagttattgaagagatgaacttgagatacataaatctaggtcagatagtaatagcattatttaaaaattgtaatgatctgctgtgatcccccccccccccaccccattctttcactgtcaccatgatgtaatttgactaaccgaaaatttaaaatttacattaactttgttttaacgacactttacctgctacatttttgtagtttatataaaccatttatgtgtcaccaaaatcttttttacaagtaacccatttcattttgggtttattaaaatcatgtatttgacataaatctaatgtctgaatgaattaaaaaggagatgaaaaaaaaaaaagtaccaggcaaatgaaattttcgtgctcagaattttcagttaaaacgttttgcttaacaccacttgagcagattgatttattaatcacggactacaggatgtcaaacattcaataattctgacatggtcttctaagaaaacccgctacgttcttcttccgttagtagcacgggatcttttattatctgctttgtcttattgtggtattgcattttctgtccgtccatgtcagtccgtaaaatgtgcatttcagggccatatcttttgtatcatttcatattggatcatcaaatgttacatgcaagtacaacttgggatggcagtgtgtcgcataccgtaactaggtcactatgacctacttttgatgcattactgtacattaaagaaaatcgttgccagggcaatactttccttgtcaattcatataagatcatcaaaccttacatgcaagtacaagttgggatggcagtgtgtcacataccataactaggtcaccatgacctacttttcatgcattgctgtacattaaagaaaatcgtttcaagcaatactttccttatcaattcatataagatcaccaaaccttacatgcaagtacaacttgggatggcggtgtgtcacataccataactaggtcaccatgacctacttttgatgcattgctgtacattaaaggaagtcgttgccagggcagtatcatccttatcaattcatataggatccttgctcgatgcgaggttggtctgggatcgatccgcgtcggtgggcccattgggctattactcgttccagccagtgcaccacgactggtatatcagaggc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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