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2024-03-28 19:15:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_041505470            4741 bp    mRNA    linear   INV 09-MAY-2021
DEFINITION  PREDICTED: Gigantopelta aegis F-box only protein 16-like
            (LOC121377468), mRNA.
ACCESSION   XM_041505470
VERSION     XM_041505470.1
DBLINK      BioProject: PRJNA727593
KEYWORDS    RefSeq.
SOURCE      Gigantopelta aegis
  ORGANISM  Gigantopelta aegis
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda;
            Neomphalina; Neomphaloidea; Peltospiridae; Gigantopelta.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_054705.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gigantopelta aegis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4741
                     /organism="Gigantopelta aegis"
                     /mol_type="mRNA"
                     /isolate="Gae_Host"
                     /isolation_source="hydrothermal vent"
                     /db_xref="taxon:1735272"
                     /chromosome="7"
                     /tissue_type="foot"
                     /country="Indian Ocean"
                     /collection_date="2019-04"
     gene            1..4741
                     /gene="LOC121377468"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:121377468"
     CDS             74..1105
                     /gene="LOC121377468"
                     /codon_start=1
                     /product="F-box only protein 16-like"
                     /protein_id="XP_041361404.1"
                     /db_xref="GeneID:121377468"
                     /translation="
MSKIAKNTKKSTWTPLTNQATNNKIFEERRVLIGKWYDRWTDDQRKKILDDLVSKSKRKQLDYARDLINRRVTERHLDFTRTLPRVISLYILSFLDPRSLCRCSRVCWYWKFLSELDQLWMPKCLRLGWILTFSPSPYEGGVWKRNYVENIKSLQVLRPKETMHIDLANMHMDKRNMKEKKHKSKETHTLPWRGSDPVPQDIWRYNVLSNEDDVHTVNKWRKMKAYGSAVDAFSKSMRRSKTATGQSLNSFTRRSQSLSKLHASVTSMTSPDRPQWAIKTSQLIGRQNGEVSAVVRPKPVSTPKTPRSARALTSTRSERDPPTTDLFPDKPWVVPDQMESDED"
     misc_feature    299..460
                     /gene="LOC121377468"
                     /note="F-box domain found in F-box only protein 16
                     (FBXO16) and similar proteins; Region: F-box_FBXO16;
                     cd22172"
                     /db_xref="CDD:438943"
     misc_feature    order(320..322,332..334,341..346,353..358,368..370,
                     374..379,389..397,401..403)
                     /gene="LOC121377468"
                     /note="putative Skp1 binding site [polypeptide binding];
                     other site"
                     /db_xref="CDD:438943"
ORIGIN      
ttcaatgtaaacaagttagtgctcgctttcagtgtaattaaccggtttgttaatggcatattaagtatctaatatgtcgaagatagcaaaaaatacaaagaagagcacttggactcctcttacaaaccaagcaactaacaataagattttcgaagagagaagagtgctcataggaaaatggtatgaccgatggacggatgaccagaggaagaagatattggatgatctggtttccaagagcaagagaaaacagctggactatgctagagatctcataaaccgcagagtcacagaaagacatttagacttcacacgcacactgccaagagttatctccctctacatcctctcgttcctggatccacggagtttgtgtcgatgttcacgggtctgttggtactggaaattcttgtcggaacttgaccagctgtggatgccgaagtgtttacgacttgggtggattttaacgtttagcccgagcccatatgagggaggggtatggaagagaaactacgtggaaaacatcaaaagtctacaggtgctgagaccaaaggaaacgatgcacatcgacctcgccaatatgcacatggacaagaggaacatgaaggagaagaagcacaaatcaaaagagacacacacgttgccatggcgagggtccgacccagttccgcaggacatctggcgttacaacgtcctgtccaatgaggacgatgtgcacacagtcaacaagtggagaaagatgaaagcatacgggtctgctgttgatgcattttctaagagtatgcggcgaagtaaaacagcgaccggtcaaagtctaaacagttttacacgtcgctcgcaatcactgtctaaacttcacgcgtcagtgacttcaatgacctctcccgaccgacctcagtgggccataaagacgtcccagctgattggtcgacagaacggcgaggtttccgctgtagtccggccgaagccagtcagcacgccgaagaccccgagatctgcacgagctttaacttccacgcggtccgagagagatcctccaaccacagatctgtttcccgacaagccatgggtggtgccagaccagatggaatccgatgaagattaaagggaagtaatccagttccgcttaacatccagcggttttacatgaacagtgttgaaaacaccttcacttaaatcattccataaaaagatatattattatggcattagatgaaagcagaaacaaatattacaaaataaaatagttattttaattattattgcatttaaatggaaacagaaagacaattaacttgttaatacatgtatatcaagttttcatttcaaaacagggctcgaacttaatgcaggcactgacagcaattactcttaactgcagtgtaaattactgtgggtcaggggactgtgtgtgggtgtatgtaatttttgtttggcatgcttccatcagagaactgttcaagcacgcctgtcgtgagcacaaccgctgacttcgccagagttttgtccatatcaggggtcaggagtctttactaacaaaagttttatttgtgtcgatgaatgaaaaatatagccatcagtggaagggatattactggtttttaattgtttatttgttgcaaacattaccgatttaaaattgctataagttggctgaaaattgtcatatttcagaattttgccggtggcaaaaaactttcataattgctgtaggcaacacattcctaagttcgagccttgttattaatgttatattattattattacatttaagcaaaaagagaaaatcactggttgatacatcattccataatagttgtttattatattactgcaattatatggaaacagaaaaattgcttattaatacatgtactttgtatgtcaagtatttttaaatataaaaaacttgtagaaccagttttttaaaaataaaatgttttcagtacttaaaaaacactttgtctttaagaaagcaatttctgtacttcttgaaacaatgttttactttgtttgaaaggatcttttgtagtgtttacttttattttacaactatgaaagatacttgttcttaatatctttttataaatggaaagaatattgataataaaaatgtattttttatgttttttattgctgtgataaatgtttcatctacctgcattccactctattatatatgatatttatttttatatacatgtattatattgtaaatgatccgaattgtatgatgtaattagatcaattatatgtaaatgtatggagcaaatgtttatagtcatctttaaatgggtagaatgtatattattattatccaattaagtttcaagcacgctgtcctgggcacacacctcagttgtctgtccaggacagtgggatagttgttagtggttagtgagaaagaaaagggtgtagtggtcttacacctacccatcgagtcattgaaacttgcactgggtgagagccagtaccatgatgcgaacccagtacctaccagccttatgtctgctggcttaaccactgtgccaccaaggccagttgtattaccggtattggttttgactacaaggattccactatgagtgtttgttggtatgggtttattttgagagtgttgtatccatttaggatgccatggaatattctgaatttaaccacaacactaccactggattcatccatgtatgtaccgtacatgtgtgtgcatatgtgcgtacaatgacgagggtagaatcggaggaataattattgtctctttcaggattgtttgtcatttcttttacatttattggggcatgaacaaaacaaaaatcacccgtaaaatgtgtgaatcggtgaagccgtttctcacataagtttgcatattatttttttgttttttgatacccagatgaatgtaaaagaaataacagacaatccttataattaaatttgaatcatacttgctaataataacactaaaagtttatactttattttggtccataaacaataacactttacaagacaacttgtccacataaaacgacgtcgtcagatatgacgttccctgacgacataatttttaagttcatcaagaaattaacaaacttccattgttatgtctgaaccaatgggatgacattatattgtaatgaatgtaagggaaagttaattatttgtatatagtcccatactgcagtggtgttttttatgggggtgttttttttagagaaaatgaacaaccatactattattgtgttaccgaaaaaagaagaagagtgaaatggaaagaccgagaaaaagaaacacgtgtattttaattcatattgctaacaaaaactgcactgattggcatttaatttcttgtttttttaaggcagcacaacactggattttaattggttgctttttgctttgtgtaacattttagaaaaatacatttaataataatttaagattttctatctgttttgaaaaatataaaggttgtctaaatctgttacttagcatttactttttacattttatacttaatattcttttattgaaattgatacagtgtatattcagttggcataaaaaaaagattatttatttgtagttattgaagagatgaacttgagatacataaatctaggtcagatagtaatagcattatttaaaaattgtaatgatctgctgtgatcccccccccccccaccccattctttcactgtcaccatgatgtaatttgactaaccgaaaatttaaaatttacattaactttgttttaacgacactttacctgctacatttttgtagtttatataaaccatttatgtgtcaccaaaatcttttttacaagtaacccatttcattttgggtttattaaaatcatgtatttgacataaatctaatgtctgaatgaattaaaaaggagatgaaaaaaaaaaaagtaccaggcaaatgaaattttcgtgctcagaattttcagttaaaacgttttgcttaacaccacttgagcagattgatttattaatcacggactacaggatgtcaaacattcaataattctgacatggtcttctaagaaaacccgctacgttcttcttccgttagtagcacgggatcttttattatctgctttgtcttattgtggtattgcattttctgtccgtccatgtcagtccgtaaaatgtgcatttcagggccatatcttttgtatcatttcatattggatcatcaaatgttacatgcaagtacaacttgggatggcagtgtgtcgcataccgtaactaggtcactatgacctacttttgatgcattactgtacattaaagaaaatcgttgccagggcaatactttccttgtcaattcatataagatcatcaaaccttacatgcaagtacaagttgggatggcagtgtgtcacataccataactaggtcaccatgacctacttttcatgcattgctgtacattaaagaaaatcgtttcaagcaatactttccttatcaattcatataagatcaccaaaccttacatgcaagtacaacttgggatggcggtgtgtcacataccataactaggtcaccatgacctacttttgatgcattgctgtacattaaaggaagtcgttgccagggcagtatcatccttatcaattcatataggatccttgctcgatgcgaggttggtctgggatcgatccgcgtcggtgggcccattgggctattactcgttccagccagtgcaccacgactggtatatcagaggc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]