2024-04-24 20:04:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040861717 3240 bp mRNA linear PLN 20-APR-2021 DEFINITION Pseudomassariella vexata NRDE-2, necessary for RNA interference-domain-containing protein (BCR38DRAFT_454635), partial mRNA. ACCESSION XM_040861717 VERSION XM_040861717.1 DBLINK BioProject: PRJNA721998 BioSample: SAMN05421895 KEYWORDS RefSeq. SOURCE Pseudomassariella vexata ORGANISM Pseudomassariella vexata Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Pseudomassariaceae; Pseudomassariella. REFERENCE 1 (bases 1 to 3240) AUTHORS Mondo,S.J., Dannebaum,R.O., Kuo,R.C., LaButti,K., Haridas,S., Kuo,A., Salamov,A., Ahrendt,S.R., Lipzen,A., Sullivan,W., Andreopoulos,W.B., Clum,A., Lindquist,E., Daum,C., Ramamoorthy,G.K., Gryganskyi,A., Culley,D., Magnuson,J.K., James,T.Y., O'malley,M.A., Stajich,J.E., Spatafora,J.W., Visel,A. and Grigoriev,I.V. CONSRTM DOE Joint Genome Institute TITLE Pervasive Adenine N6-methylation of Active Genes in Fungi JOURNAL Unpublished REFERENCE 2 (bases 1 to 3240) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2021) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3240) AUTHORS Mondo,S.J., Dannebaum,R.O., Kuo,R.C., LaButti,K., Haridas,S., Kuo,A., Salamov,A., Ahrendt,S.R., Lipzen,A., Sullivan,W., Andreopoulos,W.B., Clum,A., Lindquist,E., Daum,C., Ramamoorthy,G.K., Gryganskyi,A., Culley,D., Magnuson,J.K., James,T.Y., O'malley,M.A., Stajich,J.E., Spatafora,J.W., Visel,A., Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (28-JUL-2016) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_024467957). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3240 /organism="Pseudomassariella vexata" /mol_type="mRNA" /strain="CBS 129021" /culture_collection="CBS:129021" /type_material="culture from epitype of Didymella vexata" /db_xref="taxon:1141098" /chromosome="Unknown" gene <1..>3240 /locus_tag="BCR38DRAFT_454635" /db_xref="GeneID:63777929" CDS 1..3240 /locus_tag="BCR38DRAFT_454635" /codon_start=1 /product="NRDE-2, necessary for RNA interference-domain-containing protein" /protein_id="XP_040719630.1" /db_xref="GeneID:63777929" /db_xref="InterPro:IPR013633" /db_xref="JGIDB:Pseve2_454635" /translation="
MSSKGGKKPSVPKFSSFKPKPVPVEQTEGPPTPAADPGLITRGSHLRAHRHRSHATEESRERDRGNHDSSTRQSNVSRRPGPSEDFKEGSFTIDKRGDPLIRKYGSNHRYDVPAYRRFGSGRLLGADGFLRIERLGNRDEFFIRGYYEGGSALRGDRKSVLARGIHNKSQPIRVRQESSQAPTLTEDFLPLKSSKKRKWPNDPSSESSGEEGQSYRSIHGKSKVHEHSESDELYGSDSSASSTGSDRRRFVDPVKAKEISLSARVRDHPEDIDAWLELVNHQNTLLRMRAADGQRATQAEIKSFADIKLSLLEKGLAHADSPEQRDKLLLRIMREGSKIWDRKTVIKRWEDLMKDHSANFALWKAYVNFRQTDLPTFRYDDIKQLYVNRLRSIETAMTQDTSNTQSQELYDQLVLVFLKATRFVADAGFVELAVAAWQAMLELLFCRPVTAPDASASTMIASFQNFWESEVPRIGEEFAKGWFTYEADGGKQDAPEPRSFGVGQTPNTRDAYKAWTATEQQRAANAKVPARTMDDGTEDDPYRVVMFADIQDFLVFIPEKNLPMIQTLMLDAYLIFCQLPPAVGTSKAVKVIMQDELLNSGRNSVFEVKEVTNSIAPGQQHMDEESTKTPDFAHDYQQMAISSETLFPPSKWFRCIQAMRGSTSDQHKLILNTLKQLARSFGREEIAPYSLAFDSLDETIDDKKTAKALLKKYSTNIGLYIGYANLENARGNRDTARNVLSAALSLPTNSTHDRLRLCIASAWIDLEDGNIPGSISRILMVATDASNETASSTTQLLKARQLLGSNRDYLISSGDSGTAAIYGEGLALLEYATQTSGKEPQSEGQGDIWSAMSCVSACSDDFSSRGLAESLSHERLLQFTARLLYHHATHGPFRPAFLRDQFAKFVHFFPQNTMFLSLYAWRETRLSIDDRVRSLLDQHVLVPPHDCVSSRVFAIRHEMKTGNSHSTCAAFEHALESDEETGCRHHPGLWISYMRFCRERKELRHKAKDVFYRAVQSYPGSREVFIEAFVTLVEEMDSAELKAVYNTLSEKGLRVHVELQEFVEGWESAQKQKMMGGGR"
misc_feature 268..>360 /locus_tag="BCR38DRAFT_454635" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature 781..1734 /locus_tag="BCR38DRAFT_454635" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atgtcgtctaaagggggtaaaaaaccgagtgttcccaaattctcctccttcaagccaaaaccagtcccagtggagcaaacggaaggaccgcccactcccgcagctgatccaggtttgatcaccagagggagccaccttcgtgcacaccgtcatcggtcccatgctacagaggaatcgcgtgagcgagatcgagggaatcacgattcgtccacaaggcagtcaaacgtctcccggcgtccgggaccatcagaagatttcaaggaagggtcattcactattgacaagcgaggcgatcccctcatcagaaagtacggcagtaaccaccgctacgatgttccggcctatcgcaggttcgggtctggtcgtcttctgggagcagatggcttcttgagaattgagcgtctaggaaatcgtgatgagtttttcatacgtgggtactacgaaggaggttctgctcttagaggggatcggaagagcgtacttgcaaggggtatccacaataagtcacaacccatccgagttcgacaagaatcttcgcaggcgcctaccctaacagaggatttcctaccgttgaagtcctccaagaagcgaaaatggcctaatgatccttcaagcgagtcgtccggtgaggaaggacagtcttacagatcaatccacgggaagagcaaggtgcatgagcactctgaaagcgatgaactatacggcagtgactcgtcagcttcatctacgggatctgatagacgccgtttcgttgatcccgtgaaagcaaaggaaattagcctgtctgcaagggtgagagatcacccggaagacatcgatgcgtggcttgaactcgtcaaccatcaaaatactttgctgcgaatgagggcagccgatggacagcgagcaactcaggccgaaatcaagagttttgctgacatcaagctttccctgctcgagaaaggcctcgctcatgctgattcccctgagcaacgggacaagttgctattgcggattatgcgtgaaggctccaaaatctgggatcgcaaaacagttataaagcgctgggaggatttgatgaaagatcatagtgccaacttcgcgctgtggaaggcatatgtgaattttcggcagactgatttaccaacgtttcgatatgatgacatcaaacaactttatgtcaatagactgcggagtatcgaaaccgcaatgacacaagatacttcaaacactcagagccaagagttgtatgatcagctggttttggtcttcttgaaagccacccggttcgtcgcggatgctgggttcgtcgaactcgcagtggcagcatggcaagctatgctggaactccttttctgtcgccctgtgactgcccctgatgccagcgccagtacgatgattgcgtctttccaaaacttttgggaaagtgaagtgccacgtattggcgaagagtttgcaaaagggtggtttacttacgaagccgacggtggcaagcaagatgcccctgaaccccggtccttcggggttggccaaacgccgaatactcgggatgcgtacaaggcatggacagccactgagcagcaaagagctgcaaacgcaaaggttccagctcgcaccatggatgacgggacggaagacgatccatacagagttgtcatgttcgcagatatccaagattttctcgtatttattccagaaaaaaacctgcccatgatacagaccctgatgcttgatgcctacctgatcttctgtcagctacccccggcggttgggaccagcaaagccgtcaaggtcatcatgcaagatgaacttctcaatagtggcagaaacagcgtctttgaagtgaaggaggtgacgaattcaatcgctccaggtcaacaacacatggatgaagagtccaccaagacgccggattttgcgcacgattaccaacaaatggcaatatcgtcggagacgctcttccctccgtcaaaatggtttagatgcattcaggcaatgagagggagcacttcggatcagcacaagctgatcttgaatacgctgaaacaactggcacgctcattcgggcgtgaggaaattgccccttactctctggcctttgacagtctcgatgaaacaattgacgacaagaagacagcaaaggcgcttctgaagaagtattcaacgaacatcggactctatattggatacgcaaaccttgaaaacgccagaggaaacagagacaccgcccgcaacgtattatctgctgctctgagcttgccaacaaattcgacgcacgacagactacggctctgcatcgcctcggcgtggatagatcttgaggatggcaacatacctggaagcatatctcgaatacttatggtagcgaccgatgcatcgaacgaaacagcgagctctacgacccaacttttgaaggcgagacaactgctggggtcaaatcgagactatctcatatcctcgggtgattctggaactgccgccatctacggtgagggattggccttgttagaatatgcgacgcaaaccagcggcaaggaaccacaatctgaaggtcagggtgatatatggtctgctatgagctgcgtttcagcctgttccgacgacttcagctctcgaggtctcgcagagagcctaagccatgaaagattgctacaattcacggcccgtcttctctatcatcatgctacccacggacccttccgacccgcattcttacgggaccaattcgcaaagttcgtccacttcttcccgcagaacaccatgttcctgagcttatacgcatggcgtgaaacccgcctcagcattgacgaccgcgtgcgctccctcctagaccagcacgtcctcgtgcccccacacgactgcgtcagtagccgcgtcttcgccatccgccacgagatgaagacgggcaactcccattccacctgcgccgcgttcgagcacgctctcgagagtgacgaggagacgggctgcaggcaccatccgggattgtggatatcgtacatgcggttctgccgcgagagaaaggagctgagacataaggccaaggacgtgttctaccgcgcggtgcagagctatcccgggtcgagggaggtgtttatcgaggcttttgttacgctggtagaggagatggactcggctgagttgaaggcggtgtataatacgcttagtgagaaggggttaagggtgcatgtagaactgcaggaatttgtggaggggtgggagagcgctcagaagcagaagatgatgggtggtggccgatga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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