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2024-04-19 12:22:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_040784179            3138 bp    mRNA    linear   PLN 20-APR-2021
DEFINITION  Aspergillus ruber CBS 135680 putative RNA interference and gene
            silencing protein (EURHEDRAFT_454180), partial mRNA.
ACCESSION   XM_040784179
VERSION     XM_040784179.1
DBLINK      BioProject: PRJNA721986
            BioSample: SAMN02744096
KEYWORDS    RefSeq.
SOURCE      Aspergillus ruber CBS 135680
  ORGANISM  Aspergillus ruber CBS 135680
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Kis-Papo,T., Nevo,E., Wasser,S.P., Weig,A., Persoh,D., Rambold,G.,
            Riley,R., Sun,H., Lipzen,A., Salamov,A., Grigoriev,I.V. and
            Barash,D.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Genome sequencing and long-term transcriptional adaptation of the
            halophilic Dead Sea filamentous fungus Eurotium rubrum
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3138)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2021) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3138)
  AUTHORS   Riley,R., Kis-Papo,T., Nevo,E., Wasser,S.P., Weig,A., Persoh,D.,
            Rambold,G., Sun,H., Lipzen,A., Salamov,A., Grigoriev,I.V. and
            Barash,D.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2013) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_024467306).
            
            ##Metadata-START##
            Organism Display Name :: Eurotium rubrum
            GOLD Stamp ID         :: Gi08792
            ##Metadata-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Aspergillus ruber CBS 135680"
                     /mol_type="mRNA"
                     /strain="CBS 135680"
                     /culture_collection="CBS:135680"
                     /db_xref="taxon:1388766"
                     /chromosome="Unknown"
                     /teleomorph="Eurotium rubrum"
     gene            <1..>3138
                     /locus_tag="EURHEDRAFT_454180"
                     /db_xref="GeneID:63699303"
     CDS             1..3138
                     /locus_tag="EURHEDRAFT_454180"
                     /codon_start=1
                     /product="putative RNA interference and gene silencing
                     protein"
                     /protein_id="XP_040639733.1"
                     /db_xref="GeneID:63699303"
                     /db_xref="InterPro:IPR003100"
                     /db_xref="InterPro:IPR003165"
                     /db_xref="InterPro:IPR014811"
                     /db_xref="JGIDB:Eurhe1_454180"
                     /translation="
MSSRGNQRGRGGGGRGGSMELPYRPGGDNRGRGDFRGRGDGRGRGDSRGRGRGDGGDRGGRGRGRGDFRGDFRGRGGRGGGPPREQGPRIFTNPSGQAAPSTEVTKIEDATANALAAKNQKTPGQPRYPARPGYGTQGQPIKLYANYFELKSLGKELFRYHVDIGGDSAGRKPTGKKARQVIRLLLDEHFLQHQNSITTDYRSTLVSRIELPNEGTYVVRYRDEHEDEYLENPKVYKVTCQFTGKLNPSDLLDYLTSSNASAMFETKAEVIQAMNIVLGHRPKSDQAIVSVGANRHYAMYPDLAEKCSLGAGLEVLRGFFVSARAATARILVNVQVKYVACYQEGPLANVIFDYQRGNGSNIYKLEAFLKKLRIRANHIVKKNKKGQDVPRMKTIAGLATRADGSSLSQPSKVSHHGAGPRDVQFFLGQPGQQSSSQGQSGQTQGKKGKKHPKAGPAQAGKYITVADFFRQAYNMNLDPKMPVMNVGNRQNPSYLPVEACMVEPGQPAGAKLSGDQTRHMLNFAVRTPALNAGSLVNHGSRVLGFVGQNPTLANFNIQRGPDLVTVPGRVLPAPRVYYKDNRSQQKPVDPMNGSWNMKAIRFSQGTKLASWSWIYFDAPRARQHFNDPDDLTASLKGLAGKLNEMGVATSVPKPGRKINLSGQNTEKEVENAISDMVARHQPTLIFTILHGNDSELYKCVKQVCDVRQGVRNICVLADKLKGANDQYYSNVGLKFNLKLGGANQSLRPADLGIISEGKTMLVGLDVTHPSPGSAGNAPSVAGMVASVDRYLGQWPAEIKIQASRQEMVSDLDSMLNTCLQRWARMNKRNYPENIIVYRDGVSEGQYDIVLDKELPLLKKACEETYPATLTKKSLPRVSIIIVGKRHHTRFYPTTDADADRGANSKNGTVVDRGVTEARNWDFFLQAHSAIKGTARPAHYFTVWDEIFAHQKTPQGSPFKNASDILEDLTHRMCYLFGRATKAVSICPPAYYADLVCERARCYLSQLFDPTPAATPSGSLISGAAGGSELGDVAIHPNVRDTMFYI"
     misc_feature    349..3132
                     /locus_tag="EURHEDRAFT_454180"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    1648..3009
                     /locus_tag="EURHEDRAFT_454180"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2089..2091,2101..2103,2137..2148,2155..2157,
                     2179..2181,2188..2190,2200..2202,2212..2214)
                     /locus_tag="EURHEDRAFT_454180"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2293..2295,2299..2301,2515..2517,2977..2979)
                     /locus_tag="EURHEDRAFT_454180"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgtcctccagaggtaaccaacgaggtcgcggtggaggcggtcgcggtggatcaatggagcttccttaccgccctgggggtgataaccgtggtcgtggtgatttcagaggtcggggtgacggtagaggccgaggtgatagtaggggccgagggagaggtgacggtggagatcgaggagggagaggtcgtggacgaggcgactttcgaggcgactttcggggtcgtggaggtcgtggaggagggcctcctagagaacagggtccccggatctttaccaacccaagcggtcaggctgcaccatcgaccgaagttacaaagatcgaggatgcaaccgccaatgctttggcagccaagaaccagaagactccaggccagcctcgttatccagcacgaccgggatacggaacccagggacagcctatcaagctctacgccaactatttcgagttgaagtccttgggcaaggagctcttccgctaccatgtcgatatcgggggtgattctgccggccgcaagcccaccgggaagaaagcccgacaggtcattcgtctgctgcttgatgagcactttctccagcaccagaacagcattaccacagactatcgctctacgcttgtgtcgcggattgagcttccgaatgagggaacctatgttgtccgttaccgcgatgagcatgaagacgaatacttagagaaccccaaagtctacaaggtcacctgccagttcacaggcaagctcaatccttccgatctgctggattacttgacatcctccaatgcctcagccatgtttgagaccaaggcagaggtcattcaagctatgaacattgtcctgggccaccgaccgaaatccgatcaagccattgtatcggttggtgcaaacagacattacgctatgtacccagacttggcggaaaaatgcagcttgggtgctggcctggaggtccttcggggcttttttgtcagtgctcgtgcagcgacagcccgtatattggtaaatgtgcaggtcaaatatgtggcctgctaccaggaaggcccactggcaaacgttatttttgattaccaacgcggcaacggctcaaacatctacaaacttgaggctttcctcaaaaaattgagaattagggcgaaccacatcgtcaagaagaacaaaaagggacaggatgttcccagaatgaagacaattgcaggcctggccactcgtgctgacggatcgtcactatctcagccttctaaggtgtcccaccacggggctggtcctcgagatgttcagttcttccttggccagccgggccaacagtcatcgtctcaaggccagagcgggcaaacacagggcaaaaagggcaagaaacatcccaaagctggcccagcgcaggctggcaagtacatcaccgtggccgacttctttcgtcaggcgtataatatgaacctcgaccccaagatgcccgtgatgaacgtcgggaacagacagaacccgtcatacctgcctgtcgaggcttgcatggtcgagcccggccagcctgcaggcgccaagctcagcggagaccaaacccgacacatgttgaactttgctgtgcggactcctgcgcttaatgccgggtctctcgtgaaccatggaagtcgcgtacttggctttgttgggcagaaccctactctggcgaattttaacatccagcgcgggcctgaccttgtcactgtccctggccgtgttctccccgcgcctcgtgtctactataaggacaacaggtcgcagcagaaaccggtcgatcctatgaatggtagctggaatatgaaggcaattcgattctcacagggaactaaattggcttcttggtcatggatttactttgatgctcccagggccaggcaacacttcaatgaccccgatgatttgaccgcttccttgaagggtctcgctgggaagttgaacgaaatgggtgtcgcgacatcggtacctaagcctggcaggaaaatcaatctgtccggacagaacacggaaaaagaggttgagaatgcgatttctgatatggtggcccgccaccagcctacgctgatcttcactattctccacggcaatgacagtgaactgtacaagtgcgtgaagcaggtctgtgacgtccgccagggtgtacgcaacatctgcgtactcgctgataagctgaagggggccaacgaccagtactattccaacgtcggtctcaagtttaacctgaagcttggcggggctaaccaatctttgcgaccggcggatctaggtatcatcagcgaaggaaagactatgctcgtgggccttgatgtaacacacccgtcccccggttcggcaggcaatgctcctagcgtggccggcatggttgcctccgtagaccggtacctgggccaatggcccgctgagatcaagatccaagcctcgcgacaggagatggtctccgatcttgactccatgctcaatacatgtctccagcgttgggcccggatgaacaagaggaactaccccgagaacatcatcgtttatcgtgacggtgtctctgagggtcagtatgatatcgtcctcgacaaggaactcccgctcctcaagaaagcctgcgaggagacctacccagcgactttaaccaagaagtctctcccgcgcgtctccattatcatcgttggcaaacgtcaccacacccgcttctaccctacgaccgacgcagatgccgaccgcggtgccaactcgaagaacggcactgtggtggaccgtggcgtcaccgaagcccgcaactgggacttcttcctgcaagcccattcagccataaaaggtaccgcccgtcccgcccactacttcaccgtctgggacgagatcttcgcccaccagaaaaccccacagggatccccgttcaagaacgcctcggatattctcgaagacctaacccaccgcatgtgttatctcttcggacgcgctactaaggcagtcagtatctgcccgccggcgtattatgcggatttggtctgcgagcgagctcgttgttacctgagtcaattgtttgacccgacgcctgcggcgacgccgtcgggaagtctcatcagcggtgctgctggaggctcggaacttggagatgttgcgattcaccctaatgtccgtgacacgatgttctacatctaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]