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2024-03-29 07:07:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_040756633            2582 bp    mRNA    linear   ROD 14-APR-2021
DEFINITION  PREDICTED: Mesocricetus auratus protein argonaute-1 (LOC101838170),
            transcript variant X5, mRNA.
ACCESSION   XM_040756633
VERSION     XM_040756633.1
DBLINK      BioProject: PRJNA719779
KEYWORDS    RefSeq.
SOURCE      Mesocricetus auratus (golden hamster)
  ORGANISM  Mesocricetus auratus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Mesocricetus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_024429197.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mesocricetus auratus Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Mesocricetus auratus"
                     /mol_type="mRNA"
                     /isolate="SY011"
                     /db_xref="taxon:10036"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="liver"
                     /dev_stage="adult"
     gene            1..2582
                     /gene="LOC101838170"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:101838170"
     CDS             157..2286
                     /gene="LOC101838170"
                     /codon_start=1
                     /product="protein argonaute-1 isoform X5"
                     /protein_id="XP_040612567.1"
                     /db_xref="GeneID:101838170"
                     /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
     misc_feature    223..375
                     /gene="LOC101838170"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    376..738
                     /gene="LOC101838170"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(532..534,577..579,619..621,631..633,685..687,
                     706..708,712..714)
                     /gene="LOC101838170"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    871..2157
                     /gene="LOC101838170"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1291..1293,1303..1305,1339..1350,1357..1359,
                     1381..1383,1390..1392,1402..1404,1414..1416)
                     /gene="LOC101838170"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1495..1497,1501..1503,1711..1713,2125..2127)
                     /gene="LOC101838170"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aggtctccatcaagtggctagccatcgtgagctggcgtatgctacatgaagccctggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagagtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagctactgccttctacaaagcacagccagtgattgagtttatgtgtgaggtcctggacatcaggaacatagatgaacagcccaagcccctcacagattcccagcgtgttcgctttaccaaggagataaaaggcctgaaggtggaggtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgacgccctgctagtcatcagacgtttcccttgcagctagagagtggacagactgtggagtgtaccgtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctacaagttgggcaagaacagaagcatacctatttgcccctcgaggtctgtaacattgtggctgggcagcggtgcattaagaagttgactgacaaccagacctcaaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttggaatcaaagtgaaggatgacatgacggaggtgaccgggcgagtgctgccggcgcccatcttgcaatatggcggccgggtgagcaggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgtgggaagcaattctacaatggcattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcaatgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggtcagccttgtttctgcaaatatgcgcagggagcagatagtgtggagcccatgttccggcatctaaagaatacatattcaggactgcagctcattatcgtcatcctgccagggaagacgcctgtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggcaacacagtgtgtacaggtgaagaatgtggtcaagacctcacctcagactctgtccaatctctgtctcaagatcaatgtcaagcttggtggcattaacaacatcctagtgccacaccagcgctctgctgtttttcaacagccagtgattttcctgggcgcagatgttacacaccccccagccggggatgggaagaagccgtctatcacagcggtggtaggcagtatggatgcacaccccagccgatactgtgctactgtgcgtgtgcaacgcccacggcaggagatcattgaagacttgtcctatatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgagggccagctaccccagatccttcactatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttacattgtggtgcaaaaacgtcatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatccccgctgggaccactgtggacaccaacatcactcacccatttgagtttgacttctatctgtgcagtcatgcaggcatccagggtaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgaactccagatcttgacataccagctgtgccacacttatgtacgatgcacacgttctgtctctatcccagcacctgcctactatgcccgattggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagagggaagccacatatcggggcagagcaatgggcgagaccctcaggccctggccaaagctgtgcaggttcaccaggatacgctacgcaccatgtacttcgcttgaaggcagaatgctgttacctcactggagagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaaccaaggaagagggaggtggggtcgggagtataagaggccttgtttctgtctacagaggggatataagggtgggaagagggccagcaagacagactaccagccagaaatctctgatagaaacctcatgtcctctaccctctccccatcttgtcatatccgaccccactggaccaaaatgggcagcactagtgcccaccatacacacagttgtctcatgt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]