2024-03-29 07:07:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040756633 2582 bp mRNA linear ROD 14-APR-2021 DEFINITION PREDICTED: Mesocricetus auratus protein argonaute-1 (LOC101838170), transcript variant X5, mRNA. ACCESSION XM_040756633 VERSION XM_040756633.1 DBLINK BioProject: PRJNA719779 KEYWORDS RefSeq. SOURCE Mesocricetus auratus (golden hamster) ORGANISM Mesocricetus auratus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024429197.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mesocricetus auratus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2582 /organism="Mesocricetus auratus" /mol_type="mRNA" /isolate="SY011" /db_xref="taxon:10036" /chromosome="Unknown" /sex="female" /tissue_type="liver" /dev_stage="adult" gene 1..2582 /gene="LOC101838170" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:101838170" CDS 157..2286 /gene="LOC101838170" /codon_start=1 /product="protein argonaute-1 isoform X5" /protein_id="XP_040612567.1" /db_xref="GeneID:101838170" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 223..375 /gene="LOC101838170" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 376..738 /gene="LOC101838170" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(532..534,577..579,619..621,631..633,685..687, 706..708,712..714) /gene="LOC101838170" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 871..2157 /gene="LOC101838170" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1291..1293,1303..1305,1339..1350,1357..1359, 1381..1383,1390..1392,1402..1404,1414..1416) /gene="LOC101838170" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1495..1497,1501..1503,1711..1713,2125..2127) /gene="LOC101838170" /note="active site" /db_xref="CDD:240015" ORIGIN
aggtctccatcaagtggctagccatcgtgagctggcgtatgctacatgaagccctggtcagtggccagatccctgtgcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagagtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagctactgccttctacaaagcacagccagtgattgagtttatgtgtgaggtcctggacatcaggaacatagatgaacagcccaagcccctcacagattcccagcgtgttcgctttaccaaggagataaaaggcctgaaggtggaggtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgacgccctgctagtcatcagacgtttcccttgcagctagagagtggacagactgtggagtgtaccgtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctacaagttgggcaagaacagaagcatacctatttgcccctcgaggtctgtaacattgtggctgggcagcggtgcattaagaagttgactgacaaccagacctcaaccatgataaaggctacagctaggtcggccccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttggaatcaaagtgaaggatgacatgacggaggtgaccgggcgagtgctgccggcgcccatcttgcaatatggcggccgggtgagcaggaaccgggccattgctacacccaaccaaggtgtctgggacatgcgtgggaagcaattctacaatggcattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaagcaatgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggtcagccttgtttctgcaaatatgcgcagggagcagatagtgtggagcccatgttccggcatctaaagaatacatattcaggactgcagctcattatcgtcatcctgccagggaagacgcctgtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggcaacacagtgtgtacaggtgaagaatgtggtcaagacctcacctcagactctgtccaatctctgtctcaagatcaatgtcaagcttggtggcattaacaacatcctagtgccacaccagcgctctgctgtttttcaacagccagtgattttcctgggcgcagatgttacacaccccccagccggggatgggaagaagccgtctatcacagcggtggtaggcagtatggatgcacaccccagccgatactgtgctactgtgcgtgtgcaacgcccacggcaggagatcattgaagacttgtcctatatggtgcgtgagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgagggccagctaccccagatccttcactatgagctgcttgccattcgagatgcctgcatcaaactggaaaaagactaccagcctgggatcacttacattgtggtgcaaaaacgtcatcatacccgccttttttgtgctgacaagaatgagcgaattgggaagagtggtaacatccccgctgggaccactgtggacaccaacatcactcacccatttgagtttgacttctatctgtgcagtcatgcaggcatccagggtaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcagatgaactccagatcttgacataccagctgtgccacacttatgtacgatgcacacgttctgtctctatcccagcacctgcctactatgcccgattggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagagggaagccacatatcggggcagagcaatgggcgagaccctcaggccctggccaaagctgtgcaggttcaccaggatacgctacgcaccatgtacttcgcttgaaggcagaatgctgttacctcactggagagaagaaagctttccaagccctgggagctgtaccacccaaatccagaggaaccaaggaagagggaggtggggtcgggagtataagaggccttgtttctgtctacagaggggatataagggtgggaagagggccagcaagacagactaccagccagaaatctctgatagaaacctcatgtcctctaccctctccccatcttgtcatatccgaccccactggaccaaaatgggcagcactagtgcccaccatacacacagttgtctcatgt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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