2024-03-29 07:25:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040712993 685 bp mRNA linear INV 10-APR-2021 DEFINITION PREDICTED: Lepeophtheirus salmonis NPC intracellular cholesterol transporter 2-like (LOC121118412), mRNA. ACCESSION XM_040712993 VERSION XM_040712993.1 DBLINK BioProject: PRJNA687570 KEYWORDS RefSeq. SOURCE Lepeophtheirus salmonis (salmon louse) ORGANISM Lepeophtheirus salmonis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Siphonostomatoida; Caligidae; Lepeophtheirus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052135.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Lepeophtheirus salmonis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..685 /organism="Lepeophtheirus salmonis" /mol_type="mRNA" /isolate="Lsal2020" /isolation_source="multiple individuals from salmon farm" /host="Salmo salar" /db_xref="taxon:72036" /chromosome="5" /sex="female" /tissue_type="Thorax" /dev_stage="Mature" /country="Canada: Vancouver Island" /collection_date="10-Mar-2020" /collected_by="Ahmed Siah, PhD" gene 1..685 /gene="LOC121118412" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 132 samples with support for all annotated introns" /db_xref="GeneID:121118412" CDS 96..542 /gene="LOC121118412" /codon_start=1 /product="NPC intracellular cholesterol transporter 2-like" /protein_id="XP_040568927.1" /db_xref="GeneID:121118412" /translation="
MKSFLILITLVSLTFGLEIRDCGSQGAEITKIDFPTCIKEPCVVHRGDQLKAKLYLKAKKATDYLDCELSAIMSGIELPYPGGCDEADACQSLLEGECPVEEGAELIYDVSIYIDKIFPTIVVDGKWKLLDEDEEVFSCFNIKMDIRD"
misc_feature 150..521 /gene="LOC121118412" /note="The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of...; Region: ML; cl00274" /db_xref="CDD:444802" misc_feature order(150..152,180..182,189..191,195..197,225..227, 243..245,249..251,255..257,294..296,300..302,306..308, 360..362,393..395,417..419,465..467,471..473,477..479, 483..485,504..506,513..515,519..521) /gene="LOC121118412" /note="putative lipid binding cavity [chemical binding]; other site" /db_xref="CDD:238454" ORIGIN
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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