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2024-03-29 07:25:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_040712993             685 bp    mRNA    linear   INV 10-APR-2021
DEFINITION  PREDICTED: Lepeophtheirus salmonis NPC intracellular cholesterol
            transporter 2-like (LOC121118412), mRNA.
ACCESSION   XM_040712993
VERSION     XM_040712993.1
DBLINK      BioProject: PRJNA687570
KEYWORDS    RefSeq.
SOURCE      Lepeophtheirus salmonis (salmon louse)
  ORGANISM  Lepeophtheirus salmonis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Hexanauplia; Copepoda; Siphonostomatoida;
            Caligidae; Lepeophtheirus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052135.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Lepeophtheirus salmonis Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Lepeophtheirus salmonis"
                     /mol_type="mRNA"
                     /isolate="Lsal2020"
                     /isolation_source="multiple individuals from salmon farm"
                     /host="Salmo salar"
                     /db_xref="taxon:72036"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="Thorax"
                     /dev_stage="Mature"
                     /country="Canada: Vancouver Island"
                     /collection_date="10-Mar-2020"
                     /collected_by="Ahmed Siah, PhD"
     gene            1..685
                     /gene="LOC121118412"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 132 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:121118412"
     CDS             96..542
                     /gene="LOC121118412"
                     /codon_start=1
                     /product="NPC intracellular cholesterol transporter
                     2-like"
                     /protein_id="XP_040568927.1"
                     /db_xref="GeneID:121118412"
                     /translation="
MKSFLILITLVSLTFGLEIRDCGSQGAEITKIDFPTCIKEPCVVHRGDQLKAKLYLKAKKATDYLDCELSAIMSGIELPYPGGCDEADACQSLLEGECPVEEGAELIYDVSIYIDKIFPTIVVDGKWKLLDEDEEVFSCFNIKMDIRD"
     misc_feature    150..521
                     /gene="LOC121118412"
                     /note="The ML (MD-2-related lipid-recognition) domain is
                     present in MD-1, MD-2, GM2 activator protein, Niemann-Pick
                     type C2 (Npc2) protein,
                     phosphatidylinositol/phosphatidylglycerol transfer protein
                     (PG/PI-TP), mite allergen Der p 2 and several proteins
                     of...; Region: ML; cl00274"
                     /db_xref="CDD:444802"
     misc_feature    order(150..152,180..182,189..191,195..197,225..227,
                     243..245,249..251,255..257,294..296,300..302,306..308,
                     360..362,393..395,417..419,465..467,471..473,477..479,
                     483..485,504..506,513..515,519..521)
                     /gene="LOC121118412"
                     /note="putative lipid binding cavity [chemical binding];
                     other site"
                     /db_xref="CDD:238454"
ORIGIN      
tcatttcaaaataaataactctttatcaattattgatataaaaaagatataaaaaacagtttgagtccgagtattgtctttgttatttcaacaaaatgaagtcttttctcattctaattactttagtttcgcttaccttcggactggaaattcgtgactgcggttcccaaggagcagaaatcacaaaaatcgacttcccaacatgtattaaagagccctgtgttgttcataggggtgatcagctcaaagccaaactttatttgaaagccaaaaaagcaacagactatttggactgcgaactttcagctattatgagtggtattgagttgccttacccaggaggttgtgatgaagcagatgcctgccaatctcttcttgaaggagagtgccctgtagaagaaggagcagagcttatctatgacgtcagcatttatattgacaaaatcttccctacaattgttgtggatggaaaatggaaacttttggatgaggatgaagaggttttctcttgtttcaatatcaaaatggatataagagactaatttgaaaacagttatacttataagacacaccctttgcttcaatggaccacttcgcatatttaaaattaaataatatcataattaatacttttctaaattagtacttgtttttattgatctcgaaaaaaatagtcaacataaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]