2024-04-26 22:55:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040122546 2810 bp mRNA linear VRT 18-MAR-2021 DEFINITION PREDICTED: Xiphias gladius argonaute RISC component 4 (ago4), transcript variant X4, mRNA. ACCESSION XM_040122546 VERSION XM_040122546.1 DBLINK BioProject: PRJNA713387 KEYWORDS RefSeq. SOURCE Xiphias gladius (swordfish) ORGANISM Xiphias gladius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053423.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xiphias gladius Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2810 /organism="Xiphias gladius" /mol_type="mRNA" /isolate="SHS-SW01" /db_xref="taxon:8245" /chromosome="24" /sex="male" /tissue_type="muscle" /dev_stage="adult" /ecotype="Sanya" /country="China: South Sea" /breed="wild" gene 1..2810 /gene="ago4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:120786836" CDS 181..2787 /gene="ago4" /codon_start=1 /product="protein argonaute-4 isoform X3" /protein_id="XP_039978480.1" /db_xref="GeneID:120786836" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 262..651 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 682..834 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 835..1197 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(991..993,1036..1038,1078..1080,1090..1092, 1144..1146,1165..1167,1171..1173) /gene="ago4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1336..2658 /gene="ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1762..1764,1774..1776,1810..1821,1828..1830, 1852..1854,1861..1863,1873..1875,1885..1887) /gene="ago4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1966..1968,1972..1974,2212..2214,2626..2628) /gene="ago4" /note="active site" /db_xref="CDD:240015" ORIGIN
tcgtcagaagcaacagcagcggtagctcgggtcagtcagtccagtcagcagtcatccacgcatctatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagcgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcctgcccctacctctctgtttcagcctccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggtgcagattcccaagattgacgtctatcactatgatatcgacatcaagcctgagaaacggcctcggagggtcaacagggaggtggtggacaccatggtccggcacttcaagatgcagatctttggagaccgacagcctggctatgatgggaagaggaacatgtacacagcacatccactgccaatagggagagacagggtggatctggaggtgaccctgcctggtgaggggaaggatcagacgttcaaggtgtctttgcagtgggtgtccgtggtcagtcttcagatgctgctggaagccctctcaggccaccttaatgaggtccccgaagactctgttcaggctctggatgtcatcacacgccatctgccttccatgaggtacactccagtggggcgttcatttttctcccctccggagggctattaccatcctcttgggggaggcagggaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagccacggcgttctaccgcgctcagcctgtgatagagttcatgtgcgaggtgcttgatatacagaacatcaacgaacagaccaagcccctgactgactcgcagcgcgtcaaattcaccaaggaaataagaggcttgaaagttgaggtcacacattgcggtcagatgaagaggaagtatcgtgtgtgcaatgtcacacgccgtcctgccagccaccaaacgttccccttacagcttgagaacggccaagccatggagtgcacagtagctcagtatttcaagcaaaagtacaatctgcagctcaagtatccacatttaccctgtctgcaagtagggcaggaacagaagcacacctatcttcccctggaggtctgtaacattgtagcaggccagcgctgtatcaagaaactgacagacaaccagacgtccaccatgattaaagctacagctcgctcagcccccgacagacaggaagagatcagcagactggtcaaaagcaacagcatggtcgggggcccggacccttacctgaaggaatttggcattgtggtgcacaatgacatgacagaggtgacggggcgtgttctcccagcgcccatgctgcagtatgggggccggggactctctccgcagaataaaactgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcattgagatcaaggtctgggctgtggcctgtttcgccccacagaaacagtgtcgggaggacctgctcaagagcttcactgaccagctgcgaaagatctcaaaggacgctgggatgcccattcaaggccagccatgtttctgtaaatacgcccaaggagctgacagtgtggagccgatgttcaaacacctcaaaatgtcttatgtaggtctgcagctgattgtggtcattctgcccggcaaaacccctgtctatgctgaagtaaagcgggtgggagacactctccttggcatggccacccagtgtgtccaggtgaagaacgtggtgaaaacgtcccctcagaccctctccaacctctgcctcaagatcaatgccaagctgggaggcatcaacaacgtcctggtgcctcatcagaggccctctgtgttccagcagccggtcatcttcttaggcgctgacgtgacacatcctccagccggtgatgggaagaagccgtccatcgcggcggtggtgggcagcatggacggccaccccagcagatactgtgcgacagtgcgagtccagacgtctcgacaagatatgtcccaggagcagctcttcagccaggaggtaatccaagacttgaccaacatggtgcgggagctgcttatccagttctacaaatccacgcgcttcaagcccacacgtatcatctattatcgtggcggcgtgtctgagggacagatgaaacaggtggcgtggccagagctgatagccatccgcaaggcctgtatcagtctggaggaggattataggccgggcattacctacattgtggtccagaaacgtcaccacactcgtctcttctgctctgacaaagccgagagggttgggaagagtggtaatgtcccagctggcaccacagtggacagtaccatcacgcatccgtccgagtttgacttctacctgtgcagccatgctgggattcagggaaccagccgaccgtcccactaccacgtcctgtgggacgacaactgcttcacggccgacgaactgcagctcctcacctaccagctgtgccacacctacgtccgctgcactcgttcagtctccatcccagcaccggcctactacgccaggctggtggctttccgagcccgctaccacctggtggacaaagaccatgacagtgctgaaggcagccatgtgtctggccagagtaacggccgggacccccaggcgctggccaaggcagttcagatccactatgatacccagcacaccatgtacttcgcctgagctagtgagcacgtcagccagtc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]