2024-03-28 18:20:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040116637 4302 bp mRNA linear VRT 18-MAR-2021 DEFINITION PREDICTED: Xiphias gladius protein argonaute-3 (LOC120783578), transcript variant X2, mRNA. ACCESSION XM_040116637 VERSION XM_040116637.1 DBLINK BioProject: PRJNA713387 KEYWORDS RefSeq. SOURCE Xiphias gladius (swordfish) ORGANISM Xiphias gladius Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053421.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xiphias gladius Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4302 /organism="Xiphias gladius" /mol_type="mRNA" /isolate="SHS-SW01" /db_xref="taxon:8245" /chromosome="22" /sex="male" /tissue_type="muscle" /dev_stage="adult" /ecotype="Sanya" /country="China: South Sea" /breed="wild" gene 1..4302 /gene="LOC120783578" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:120783578" CDS 760..3342 /gene="LOC120783578" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_039972571.1" /db_xref="GeneID:120783578" /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 976..1260 /gene="LOC120783578" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1288..1440 /gene="LOC120783578" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1441..1803 /gene="LOC120783578" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1597..1599,1642..1644,1684..1686,1696..1698, 1750..1752,1771..1773,1777..1779) /gene="LOC120783578" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1936..3213 /gene="LOC120783578" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2347..2349,2359..2361,2395..2406,2413..2415, 2437..2439,2446..2448,2458..2460,2470..2472) /gene="LOC120783578" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2551..2553,2557..2559,2767..2769,3181..3183) /gene="LOC120783578" /note="active site" /db_xref="CDD:240015" ORIGIN
catatttagctggcttgccgaagcccagcagagttgatctgtcaaccagactgaaaatctcgacacttgtcggcggatacagcccgttgttgacagccttattttggcactgggacacgaaccacagaagacgacgtcgttgggatacggtgcctgaggagcggggccgtgtcggcggccgtttttaacgagatatatgtagccgtcgtctgtcagaattccaactatccaacagccgagctagccagctagctaattactgtagctaccccgacgctcgttgtgccgtggttacggatttatgtggtttctgttgacgttcagctatctgtaggaattcatttggactcagtgaccccgctgtgatgatatcctgacagctcctgtcgtcctttccagccactttcctgagcctggctagcgagctaccttggctaactagcaggttttcactgccacagcgtcgcgtcgaggaaccactaggtttcgccgtggcagtgaaatccgattggatacgttgacagtgtgcgaacggcagtgtgcggggacgccgaaaacccgcgggccggcgaaacgaccgtaccgaagggccccttttgacagtcggcagggaggggtgctaacagagaccagggttctcggccactcagtgctgcagaggcagtgcactgccgaaggagacaccggattgaacggagcaagagtcccaaacgtttgacatctgtgatccgggaagtgatccgggcagggacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatggggaagccaatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctctacgaggtggatatcaagcctgacaagtgtccacggcgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccggtctatgatggaaagaagagcctgtatacagccaacccactgcctgtggcacctacaggggtggacctggatgtcactctaccaggtgagggagggaaggatcgtcccttcaaagtttccatcaaatttgtgtctctggtcagctggcacatgctccacgaggtgctgactggccgcagcatgcctgagcctctggagctggacaagcccatcagcaccaaccctgtacacgcagtggacgtagtcctgcgacacctgccctccatgaagtacactccggtgggtcgatccttcttctcagctccggagggctatgaccatcccctaggaggtgggagggaggtttggtttggcttccatcaatctgtgcggcccgccatgtggaagatgatgcttaacattgatgtgtctgccaccgctttctacaaggcccagcctgtcatccagttcatgtgtgaagtgctggacatccacaacatagacgagcagcctcgccctctcacagactcgcaccgggtcaaattcaccaaagaaatcaaaggtttgaaggtggaggtgacacactgtggaaccatgcggaggaagtaccgtgtctgcaacgtgacccgtcggcctgccagccatcaaacgtttcctctacagttggaaaacggtcagacggtagagcgtactgtagcccagtacttcagggagaagtacaacctgcagcttaagtacccacatttgccctgcctgcaggtgggccaggagcaaaagcacacctacctgcccctggaggtctgtaacattgtagctggtcaacgatgcatcaagaagctgacagataatcagacctccactatgatcaaagccacagctcggtccgcacccgacagacaagaggagatcagcaggctggtgcgtagtgccaactacgaggccgacccatttgtgcaggaattccagttcaaggtgcgcgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcaggaaccgcactgtagccacgcccagccacggggtgtgggacatgagagggaagcagttccataccggggtggagatcaagatgtgggccattgcctgctttgccacacagaggcagtgtcgggaagaaatcctaaagggtttcacagaccagctacgtaaaatctcgaaggatgccgggatgcccattcagggccagccatgtttctgtaaatacgcccagggagcggacagtgtggagcccatgttccgacacctgaagaacacctacgccggactgcagctcatcatcgtcattctgccgggaaagactcctgtctacgcggaggtaaagcgtgtgggagacaccctcttgggcatggccacccagtgtgttcaggtgaagaacgtggtgaagacgtcacctcagaccctttccaacctctgcctcaagatcaatgtgaagctgggaggcatcaacaacatcctggtgcctcatcaacgaccctcagtttttcagcagccagttatcttcttgggagcagatgtcacacatcctcctgctggagatgggaagaagccttcaattgcagcagtggtaggtagtatggacgcccaccccagcaggtattgtgccactgtgcgggtccagaggccccggcaggaggtcatccaggacctggcctccatggtgcgggagttgctcatccagttctacaagtcaacccgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgtgaggcctgtatcagcctggagaaggagtaccagccaggcatcacctacattgttgtgcaaaaacgccaccatacacgcctcttctgtgctgaccgcaatgaaagagtcggacgtagtggaaacattcctgctggtactaccgtggatacggacataacgcatccctacgagtttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactaccatgtactgtgggatgacaattgttttaccgctgatgagttccagctgctcacctaccagttgtgccacacctacgtgcgctgtacccgctcagtctccatccctgcgccagcctactacgcccatctggtggccttccgcgcccgctaccatctggtggacaaagaacatgacagcgctgagggcagtcatgtgtctggtcagagtaacggtcgggacccccaggcgctggccaaagctgttcagattcaccacgacactctgaggaccatgtacttcgcctgagctacaccaaccctccccaatcattgccacccttaacacacacacaaacacacacagacgcaaccatgcacgcctggcttgtcagtcaaggatcctcataggtgcaagtcccgccccccacacgcctagtcaatccggacctgacactgtgcagaggaaagcagggaggagggaggggaagaggcacccccacactggactgaggatgcaaacgctgctttaaaaacaaacaagagagaaactcagcactattatgcaatattaaaccagccaactagttattttcaccctcatcaggccctcttttcattgcccctcctatctgttttcccctgtttgtctcctttacttgtggcctagtgggtgtttttcttgtttgtttttacttttcccctcctttggcacagtctctctctatgatctactaatctgcccctttgccatctacagtacctcaagtcagtttgagcagcagcacttttacattctgtcagttttactgtagtttgttgttgattctccccagtgtttgaaacgagggagcagagaaggaagggtcagactctggagtttttcagtggtgtttgatttcttttggaatataattatttcgttggacgagaggtcctcccagttgccaccttttatttttccttttttcctcttgtttccaatgttctgtcacttttcactagtgtgtgaaatcaccagttacatgtatggagcaacatgttcttttgagcacactgccacctgttggcgacgaggtataaatgccccctgaaagtcacaacaagttgttgttgtcttgtaaggttttgatttatctttagcagtcagctgtcacatttaaatgggggcagtttatattggctggtatatcaattgctcaattgcagccatctatggattttatttgaagtataacactgttatttgattctggttgttatttttcct
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]