2024-04-20 12:21:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039851025 4578 bp mRNA linear MAM 02-MAR-2021 DEFINITION PREDICTED: Pteropus giganteus argonaute RISC catalytic component 3 (AGO3), transcript variant X6, mRNA. ACCESSION XM_039851025 VERSION XM_039851025.1 DBLINK BioProject: PRJNA703023 KEYWORDS RefSeq. SOURCE Pteropus giganteus (Indian flying fox) ORGANISM Pteropus giganteus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024353787.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pteropus giganteus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4578 /organism="Pteropus giganteus" /mol_type="mRNA" /isolation_source="ENVO:00010625" /db_xref="taxon:143291" /chromosome="Unknown" gene 1..4578 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns" /db_xref="GeneID:120593272" CDS 1960..4335 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X4" /protein_id="XP_039706959.1" /db_xref="GeneID:120593272" /translation="
MVQHFKVTIFGDCRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFNADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 1969..2253 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 2281..2433 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 2434..2796 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(2590..2592,2635..2637,2677..2679,2689..2691, 2743..2745,2764..2766,2770..2772) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2929..4206 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(3340..3342,3352..3354,3388..3399,3406..3408, 3430..3432,3439..3441,3451..3453,3463..3465) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(3544..3546,3550..3552,3760..3762,4174..4176) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
tttgtaagacataacatactcaggtaggtttcatttttgtagcaatcaccagatatttttaaggatttttaaattctaccctgaggttttacaaaaattcatcatattttactgtgcaagaattctttcctcctcaaattaaagttattagtgaaaggaagccactaaagatgggttaggttatcctcacttactcaaattttctttcccaaattgctttcctatgtattactttagaagttataatattttatgtattttacttattgtagttttactttctattgtaagccatgaagctggcttaacaatatacatctatatattgtgttaacatttctacatttgaacaaaatatcaaagtatcccctacaacccattgttataataaaagactagtgcttcacaactataatatagagaaaattcagttcacagtttctgttaattatcagaattctttctttgtattaatttactctatttgatgctaatgaattgggatgggtccagttgtttgaaagacttcagtacttcagtataattcttgatgtatatttttgagataatatgctgaatttttatataaaaatagtatcatacatatttgcatttttctctcaaagtactttcattaatatttcatttggtccctgtaacagccatgaaactattatctcatttttattgataaaggagctaaagtcagagaggcaagtaacaacttagtgaccgagtgagactaaaacttatgtctacttatttgttctctgttacttatcttaccacatattttaaagttttctcaaattggcttttcctaattcaaactttcctcataatgcaatgagtacctttgctgctgtagctgactagataaattactgttgcagggtttctgctctagttccacatgctagcatgatgaacattcttaataaactaccctttgccagtatcttctgagatatgaaatgaaaactcaaatgcctggatttgtctatttgttaacttcttactaaagttttgttaaagctctaagtgtatcagttaatcacatcatattagtgagagattaaaatgaagagacttaataaattgtggtccttataaaagctgattctctttgaagcaaaggttttagtagttgtgaactcaagtagtttaatgctaaaatttcccagtatattctaaccattcccttaaggctctgaggtcttaagttccaatcagtatttagtgtaattatttcttaaaagagtttctatatttgataccatgataaaatctgcagtgtttcattgtttggtattctcttagttgaattttactatttgagcaaactgttagagggcttgcaaagattgtttatttcaatcttttaattggtaccttccctgacctaacttctctttgaacagttctagcaaggatgaactcagacactttaaaaggtagtataatttacttatgaataactctggtggttaaaaaatgttagaaatttttgttcaaaatctagctctttgtattttttcagctatttgtcctagttctatcctcccacaggttttctactcagtttttcacatgacagtccatcaaaatagccaaagacttatatataatttcttttgagtctttcttattccagagaaaaagtccttagttggatttatttttactcatactacatgagttttatcaggattaccttcttctgattatgtttcattttttaaggcattaaatttttccaaattgaacagagtactccagattgtgaaatgacctctgtaatatatgatgggatggttacctaccttatactgggtacttaaatatatgcaacctgagttttttaattttgaggaagctacatcacactgttagctcattctggacttatagtcacctaaagcccctttccacaagagcagtagggaggtggttgactcaatggttcaacattttaaagtaactatatttggggactgtagaccagtttatgatggaaaaagaagcctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttacctggggaaggtggaaaagatcgaccttttaaggtgtcaatcaaatttgtctctcgggtgagttggcacctactacatgaagtcctgacaggacgtaccttgcctgagccactggaattagacaagccaatcagcactaatcctgtccatgctgtcgatgtggtgctacgacatctgccctccatgaaatacacgcctgtggggcgttcctttttctcagctccagaaggatatgaccaccctcttggaggaggcagggaagtatggtttggattccatcaatctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacaatatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacatacgtatctgccactagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaaccgacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgcgtacttccagcacctatgctccagtatggaggacggaatcgtacagtagcaacaccaagccatggagtatgggacatgcgaggaaaacagttccacacaggagttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcggggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacatactctgggctgcagctcattattgtcatcctgccagggaagacgcccgtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccatctgtgttccagcaaccagtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggacgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttcggcaggtgttatattatgaactactagcaattcgagaagcctgcatcagtttggagaaagattatcaacctggaataacttacattgtagttcagaagagacatcacactcgattattttgtgctgacaggacagaaagggttggaaggagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttaatgcagatgaacttcagctgctaacttaccagctctgccacacttatgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtagacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagattattctctgagaggaagaactgaaagatgaatcgacatacaacgtgtttccagtggagttcgttgagtggggatgcctgcagccatacagaaaccaacactgtggggaccagggtctgatttttatgttgatacaagtaagattgtttacttcatcaaggaacacagcactattatgcaatatgaaaccagccaacagcgcttttgtgcggtctcctgtaggaagtatcgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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