2024-04-20 21:36:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039731487 10791 bp mRNA linear VRT 24-FEB-2021 DEFINITION PREDICTED: Passer montanus argonaute RISC catalytic component 2 (AGO2), transcript variant X3, mRNA. ACCESSION XM_039731487 VERSION XM_039731487.1 DBLINK BioProject: PRJNA703052 KEYWORDS RefSeq. SOURCE Passer montanus (Eurasian tree sparrow) ORGANISM Passer montanus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Passer. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024373034.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Passer montanus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10791 /organism="Passer montanus" /mol_type="mRNA" /isolate="IOZ18808" /db_xref="taxon:9160" /chromosome="Unknown" /sex="pooled male and female" /tissue_type="blood" gene 1..10791 /gene="AGO2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:120512785" CDS 774..3218 /gene="AGO2" /codon_start=1 /product="protein argonaute-2 isoform X3" /protein_id="XP_039587421.1" /db_xref="GeneID:120512785" /translation="
MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKQVELEVTLPGEGKDRIFKVAIKWMSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYTGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 909..1136 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1164..1316 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1317..1679 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1473..1475,1518..1520,1560..1562,1572..1574, 1626..1628,1647..1649,1653..1655) /gene="AGO2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1812..3089 /gene="AGO2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2223..2225,2235..2237,2271..2282,2289..2291, 2313..2315,2322..2324,2334..2336,2346..2348) /gene="AGO2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2427..2429,2433..2435,2643..2645,3057..3059) /gene="AGO2" /note="active site" /db_xref="CDD:240015" ORIGIN
ctccccttcccccgacagcgtagccggggctcgggctcgctccctcccccgtgccctcccctggagccgccgccgcctccgccgccgcacacacggagacatgtacccgggagccccctccgccggacccggtgagctttcgcccgggtttctttccctcctccgctgcccccggagcggctttcccggtccgtgtccgtggggagccccgggagctcctcttcccccccggctggggcctggctggagcggcggaggaaggagggtcagggcgccgccgccacctcgggcagggccgcgtgtccggaggcccctctgaggggagggtcgccttccctgccgcgctcccccctccctctgccgagccctgaggccggcgcggctcccgctgcggaccggggtctccatttcctctctcccggctccatcccgggattcccggccggccgcgtgttcctgggcggccgcgccgcgatagttgcgcggggaggtgcgggggaagcgcccgcacgtcgggagcgctgaggggcagcgctgggcgtcctccggctcgtctgtgctgggagcgaatctgggagcaaaggaaaggcggacgtgcaaagaagagttagcaactcctctagggacgtttactatcactttggggaaatacagtgctcacacctcctcccccattgccaccaccaatccagggatatgcctttaaacctcctcctcgaccagattttggcacttctgggagaacaatcaaactgcaggccaacttctttgaaatggacattcctaaaatagatatctaccattatgaattggatataaagccagaaaaatgtcctagaagagttaacagagaaatagtggagcatatggttcagcactttaaaacccagatttttggggatcgcaaaccagtgtttgatggaagaaaaaacctttatacagccatgccacttcccattgggagagataaacaggtggagctggaggtcacgctgccaggagaaggaaaggacagaatatttaaggtggccatcaagtggatgtcctgtgtgagcttgcaggctttgcatgatgctctctctggccgcctgccgagcgtcccgtttgagaccatccaggccctggatgtggtcatgaggcacttgccttccatgaggtatactcctgttgggagatctttctttacagcatcagaagggtgctcaaatcctttgggtggtggcagagaagtttggtttggcttccatcagtcagtcagaccttcattatggaaaatgatgctaaatattgatgtgtctgcaactgcattttacaaagcacagccagttattgagtttgtctgtgaagttctggacttcaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaataaaaggtctgaaggtggagataacacactgtggacaaatgaaaaggaagtacagagtgtgcaatgtcaccagacgaccagcaagtcaccaaacattcccacttcagcaggagaatggacaaacagttgaatgcactgtagctcagtattttaaggacaggcataaattagttttacgctaccctcaccttccatgtttacaagttggacaggagcagaaacacacataccttcctctggaggtgtgcaacatagtggcaggacaaagatgcataaagaaactcactgacaatcagacttccactatgattcgagccactgccagatcagccccggaccggcaggaagagatcagcaaattgatgcggagcgccagtttcaacacagacccttacgtccgagagtttgggatcatggtcaaggatgagatgacagacgtgactggtagagtccttcagcctccctcaatcctctatggaggcaggaataaagcaattgctacaccagtgcaaggtgtctgggacatgaggaataaacaatttcacactggaattgaaataaaggtttgggcaattgcctgctttgctccccagcgccagtgcactgaagttcatcttaagtccttcacagaacagctgaggaagatttccagggatgctggaatgccaatccaggggcagccctgcttctgtaaatacgcccagggagccgacagcgtggagcccatgttcagacacctcaagaacacttacactgggctgcagcttgtcgtggtcattctgccaggaaaaacaccagtctatgcggaggtgaagcgtgttggtgacacggtgctgggaatggccactcagtgtgtgcagatgaaaaacgtccaaagaacaacaccacaaactctgtccaacctttgcttaaaaataaatgtcaaattaggaggtgtaaataacattctattgccacagggaagacccccagtattccaacagcctgtcatattccttggtgcagatgtaactcacccaccagctggggatgggaaaaagccttccattgctgcagttgtgggcagcatggatgctcatcccaaccgttactgtgccactgtgcgggtgcagcagcaccgccaggaaatcatccaggacttggctgccatggtcagggagctgctgatccagttctacaaatccaccaggttcaaaccaactcgaatcatcttctacagggatggtgtttctgaggggcagttccagcaggtcctccaccatgagctgctggctatcagggaggcttgcattaaactggagaaggattatcagcctggcatcacatttatagtggtgcagaaaaggcaccacaccagactcttctgcacggataaaaacgaacgggttggaaaaagtggaaacattccagctggtaccacagtggacacaaaaatcacccacccctcagagtttgacttctacctgtgtagtcatgctgggattcagggaacaagcagaccctctcactaccacgtgctgtgggatgacaatcgcttctcgtcggacgagctgcagatcctcacctaccagctgtgccacacctacgtgcgctgcacgcgctccgtctccatccctgccccggcctactacgctcacctggtggccttcagagccaggtaccatctggtggataaagaacacgatagtgctgaaggaagccacacttctggccagagcaatggcagagaccaccaagcacttgctaaggcagtccaggtgcaccaggacacgctgcgcacgatgtactttgcttgacacgttctcatgttcagcggctccggacaaggcagagttggattcacaccagaccagctgcacttagaccaacagatgccccaccccagggacagccagcaatgagtgatgcatctttattcctttctttcctatttgcaaggaagccttccgtccagaatttcagacttgatcacaaactgcattcttgtaccaaaccccactgttgtcggaaatgtggtttgccaaaaatctctgagctgcttggtgtaaaacagacccagtttttataattaaatcaagagctgcaatctcagggcttagggaagaaaaacaaaaaaccaaaccaacaacccaacccacaaaactcctcattcaagtttgctgttcattgagttgcttttgataatttggaaagatctagttaatactaaggtttgatgagctaaaatgctgtgaatcagcttttagtacaaaaaagcaaaacgtcttttgagtatttatgaagccttgattattctagatacatttacaaaatttttattttcaaaataagagcgtgacaaaattctggtttctaattgtcttataaagattattctcagattattctctgtgtgtctaaggacaaatgtattttctgaagcttgtcttgaatgttttttattgtgctgcattttaaaatgtttttcgtagactaaagatgaatctaaaaaaaaaaaaagaaaaagagtaaacctgtatctaagctttcaatagctacagttagattggcagaagaaaatgtgccatttaaaaaaatttgtaaagattttttttaaatcatactgacagctaactttaggatttgtcatacaggactgtgacacttactttccaaagtctctaaagaatacgggtctgtggtgatgaatacagtacaatcctttttcactgttgtttgagttaatgtaaatgttatatatgtttcacagtattaatgtgatagactagatgctattatttatttttatttactaaggagtgctcattatacttctgttaacatatcaagaatgctttgaacttagaaagtaaaatccttttcgtggggacattactcttcaaatgcaaaaacaaaaaaaatatgcagtcgatgtggtgagaggagagagatgcagccagtgtctgttgtagcttgggatttgcagaaaggctttttcaatgtgcacacaacacagcaggttttacctctgcagttcagacgcacacaagaccaacatcctacattcattcaagcacaaaacaattgtattttatttatatgttgagtagtggtgaagcaggagctctgctagaggagagtggctcgctggaagttaggcagaagtcagagaatctatgcagtaaagataaaaattaggaaactgaagtttacttagggagggaggtgaagctctcttcattatgcataagatccgtaggaaatgtgagagttttgccattctcttaggagaagcattaactaaaactgataattatgagacagatgcttctgttagtttgcacactggattcacaaaaaccataacacacatgtaaaccattgcactaatgacaatgccacgagcaggtttaggagaaaatggaaaaagcccaggaaagttgtttatgctgacttgatcttgtttgtttttccatgggataactgaaataagatgctgagaggcaggttggaaaaccttcattctcctccactgatggatttttgttttgtcttttcccttttctccgagcagctgctcagtctctttggacacttttacctctggccactgggatgggcaagtagctttaacccatgcagagctctgggccacagagcaggtcagctgcaaccaggtggtgttgggtaaggtagaaaatgcccaacctttgctgcataaagacttttaggtacataattccagtccagatcttcaccttgtagcagtgtgtcagttgtcagtgttctgtaggtgaaatgtaaaacctgttaatgaaataatcatatttgtactattctgattgggtgattaggctgctggctcagagtatcctcttggtcatagttctataaattcagatttctgtaaatttgaagcagatcctaggtagcattgtctgtcttgctgtgtgccagcgaggttgtacctacctcccctcaagctcccctaagctgcagatcctccccgtggtgggtgtgttgcacttctctgtgtttccttcagagctttcctatttcagtgaagatattcatttggcagagttttatataagaattatttttatatgaattcttcttatcaaataggataaagatcatccattttaagacatcatttaacttatttgctgtctgttatgcagagacctcttggatgtgaaattcatccccctctttccatgcagatctgggacagtggaattgtacaggtggtcagatggggtgaggagggcaggatctgtcttgacctcaaatctcatttctgaagcagcctgtgactgcactgcatcctatttaaaatgtttcctttgtgagaaaaggagttttaggcaggccctgaatctgagagtagctgttgtttgtgcatcctcttggaatgagcagaaataatgtagctttccttccctaagtatgaagaacttgggatgtttatgtgcatttcaggacatttttaccttttacagatctttctaagcttctaatactgctaattctttatgccttgtgatttacagaaagactccacaactggtaaagttgtaaagcaggtctgtatttatttggtgattggcaaattaatttctaaccctcatgtttcacgtgtgtctccctccttttctctcccaccagtggtgaattagtgaataatttaaagcatttaagaaaaaaatactaattaggtatatactttgtaaagtatagcatgctagcagtccagcacctctcttcctgggaatatttttaacataaattacatattcaagaatgtctcctgtccaaaaaaaaaacctgccacaaacacataaaatcctagaattattttttattctgcacctcccacatgtctggtgcagaacagcaacatctcaggtcagcacaaagctcaagaagtctcagtctcccccaggctgctggtggagaagtgtcagctgaggtcacagctctgagtctgggccactgtgcaggtcaggtcagcaataaccaaatttgtgccaccctcaggcacttggggcattttccagcctgtgcaaaggactctcattgcacagccccccccaaaaacagcatcagcaagtgtgaaatgctgctcttgggaggtgcaagtactatcaaaatacacaaaatatttaaaagtttgtctttttttccctgatgtgcaaaatctaatgcaatgatgaggtttgcttggtggtggagatttctgctgcagtggctgaacagagtaaccagtccactccatctgttccagcccccaggaaaaaactgagctgatcctcaggagcaaatgtcctgttgagaaatgctggaaggaggtggatttgtctctgcctttatgtggcatttcagacagccctatgcaatttaacacgtgtgtgtgtatgcactgatgtacagagtgaggtcacttgttttgttagagctcctcattttggcttggcttgctttagaatatttgactttgtgaattacaatcaatgatcttccacgttccagaggctttggcacaggaattcccttgtttcttgatctgtcaggtaacaaatacctttgatctccatccaggcccccaggcagcattccctgatagtaaaagaaaaaaggttgtgaaggtttggctttaattctgcctctctcaataactcctgcagcctttgttgtaacagagtcttgttcttgttggatcatttttataacataagacaagaggtttttccacaaggattttcaaattgaaacttctggagaggaggtgtgaggagtttagggttttttttcctgaaaagattgaagtttctaagatgcttctaagtttttctttctgactaaagttgttcatgcaggtgcccaaaggcttttgattaaatagcatactcagtcaaataagcacctctggtggcataaataacccataagggactttttttttttaatatatatttttctcattaactaaacgaatgtaagaagagttctcagtatttttcacacttgagaccagtgtaattaaactcacttgttttccttctaccatagtatctctctttgtgtggctttccccattcctaatgcagggcagtcttttgttttttacttctatattccatttggtcacatgcttcttgatgcacacatgccatctttcttaaggaaaacttcaagtagaaggtaattgcactgattgttgggttttttaaactccctttttactgtaagattttttttttttgcatctgctgtagctgttggaaaatactgtaaatactgctctgtacagcaagtactgaaatgctggggataccattccttgttctattttccagaatactgccatattttccagtgttgaggtaggagctttgctgttaaatgctgttacactttgtgtgcattatggtatcaatccaagaagggcacagttgctgtattacagtggaaatacttcgggtttgtctgaatttataaaacatttcttccttctctctgtgcacatttctcccagagcacagagatgcagtttttcagctctgtgctcattgtctgtgcaaggttcaaatgccagttttggtatcagtttgatgactgatggcattaatgtaatatttggattatcagatgtagctctcccaggtcttccttgcttgtctgattcttgtgttgtagaagcagaatccgtggatgtggcagaatttagtggaatgacagggatttgggatccacttatgatgtcttgctgtctgtccctgcatggtgtgggattgggcagtgcagaggatgttccagtgctctgagctgcccatagatctcccatccatccatcagcaattgcctttttcctcccagaaccctcggggatgggacagagcccaactccagcccccttggctgatgttaggatgcaaaccagcaagttctgtcttctgtttctgagggttaaagactggaaagatgcatttctgagagggtttaatccagattgtatgggaagggggtgctgcgtgtgcttggtgtggcacagaacctgtttagtcccatttagtgtttcagttgctttgtcagagtctttctttgaagtgttaatttgaatgtaattgcttggccaaatcactacaaaagtgggtttctgggaatctttagttacaaagcaggtgcagttcaaggctacctcctgtattccttcatggaagaattaattgaagtgaacctcccactaagcagccaaaatgctcccagagggactggatttgtgctggtctgttccttactgggaagtggcagtgccatactgtgatcctgggtggctgctcagccttccctctgtcttccagaggcatccctgtgtattgagagggtaccagacctgccaagtggcacatctggcacatctgcttctggtcaggatcactccatagcagcagctccctctgtgacctgtcccttcacttgactttctatactgttgttttccaaatgaaaaatgtttctgtactttacctgttggccagaaaatgtcaggttttctctgcaaatgacatgaaggtgcttgaaatatattttgagtctgaggcaaaaaatatgtattggattatttttttaatgtgttttctaggtaaggtgacatgtgactgtaagaatgaaaatactttattccctgctcagaaaatgataaacttaaaatgtggggaaaaaaaccaaaccaaaacaaaaaacaacccaaacatgagtatgttcatcttgggactgtttagtgtcagttctgtgcaaagccttggccaaaactcaaccttgacatcagtgcacgtggactgagggtactttaagtgacctgaaatgaaactgtagaaaactgtgttaatacatcagattttgtttacacttattccagacaagcttcctcatctcagaacaaaccactctgctgacagaaatacctgttggagcacagtgtgctgatgtggtttcatagcagtgttaaagttgatttttatttacaagcaactgggctttctgctgtggattttggcctgtcagagtgactttcctgagattctgtgctccctgtaatttccttcccttaatctctgggtctagactctgatgaagctcatccatggcaggaggattgcttatgtcctgactttctggagcccagattttgcaagagactgaataaaccattataaaccagctcattaataactgaatgtggtaaaatcctgtcaggttggttcagttctcagtcatgatttaacaaagcccccccaaaagtgtgaagtgcagggtaaatggctcctctgtcattggtgggagcagagttttgtgttttccagacaaggcagacccaggatcatcaggaagtttggggagtgaaggagctccatgctgggtgctgctcatgccccagagaagagaaaccctgggtaccccgagccttggggaaatgagagagaaagcaaggggagacatttccttcaaaattgccagtttaagcacttgttaaggtgacagtttaattcttagttttccttctggcctctctcaagtgccccacagaaatcctccaccctgcacccatctgctggccccatcccagaaggggaaggctggcagggagctccccaagtcgatttgtggtgttgggagctctgacttggttggggctggatcaggggcgctgctggatctggagggaggagaggttggcaggagttcattgtgggagttctgcaagtggcagcactacaaacccacagcaccagatgcaggctgtggctgctccttcttcccacctaaatatcccccaaaaaagcaattccttgggatttgtgtatgcactgcctcagcagatccattgtaaacctgcctgaggctgctcttccaccagccaacctccctgaggagccctgggatgcatggcagttctgtatcaaagggaatacagggaatgcagttctgtatcaaagggaataatcctttccacagggttctcaggagtgcacaggctttagttatatttttcccccacattttggatgtgctgaaccatggactttgttatttgttttcctcccttctttaagcacaactaaaccacttgctggaacagctgctctctgctcatcagcagggattgcagatgctgtctgacctgggagcaagcctaggagttgtccccaaaatataaattttaacttttctagtcattttattggggtttttttgagtgtgcttggcaggcatgaatggtgaacaggtcagcaggcaagcttgggagtctctaatcctctggatgctgctgtttgtgtttgctgtgttaggttagattcctgtcaggacaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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